KEGG   PATHWAY: uah00270
Entry
uah00270                    Pathway                                
Name
Cysteine and methionine metabolism - Ursus arctos (brown bear)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
uah00270  Cysteine and methionine metabolism
uah00270

Module
uah_M00034  Methionine salvage pathway [PATH:uah00270]
uah_M00035  Methionine degradation [PATH:uah00270]
uah_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:uah00270]
Other DBs
GO: 0006534 0006555
Organism
Ursus arctos (brown bear) [GN:uah]
Gene
113254538  CTH; cystathionine gamma-lyase isoform X2 [KO:K01758] [EC:4.4.1.1]
113254441  KYAT3; kynurenine--oxoglutarate transaminase 3 isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
113266490  KYAT1; LOW QUALITY PROTEIN: kynurenine--oxoglutarate transaminase 1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
113254145  CBS; cystathionine beta-synthase isoform X1 [KO:K01697] [EC:4.2.1.22]
113255170  BHMT; betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
113255171  BHMT2; S-methylmethionine--homocysteine S-methyltransferase BHMT2 isoform X1 [KO:K00547] [EC:2.1.1.10]
113258942  MTR; methionine synthase isoform X1 [KO:K00548] [EC:2.1.1.13]
113243158  MAT2A; S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
113264057  MAT2B; methionine adenosyltransferase 2 subunit beta isoform X1 [KO:K00789] [EC:2.5.1.6]
113259226  MAT1A; S-adenosylmethionine synthase isoform X1 [KO:K00789] [EC:2.5.1.6]
113264734  AMD1; S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
113270515  SRM; spermidine synthase [KO:K00797] [EC:2.5.1.16]
113242233  SMS; spermine synthase [KO:K00802] [EC:2.5.1.22]
113260578  MTAP; S-methyl-5'-thioadenosine phosphorylase isoform X3 [KO:K00772] [EC:2.4.2.28]
113251362  LACC1; purine nucleoside phosphorylase LACC1 isoform X1 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
113247169  MRI1; methylthioribose-1-phosphate isomerase isoform X2 [KO:K08963] [EC:5.3.1.23]
113265045  APIP; methylthioribulose-1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]
113263217  ENOPH1; enolase-phosphatase E1 [KO:K09880] [EC:3.1.3.77]
113269310  ADI1; acireductone dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
113252457  TAT; tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
113254224  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
113243274  IL4I1; L-amino-acid oxidase isoform X1 [KO:K03334] [EC:1.4.3.2]
113261284  GNMT; glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
113242975  DNMT1; DNA (cytosine-5)-methyltransferase 1 isoform X1 [KO:K00558] [EC:2.1.1.37]
113270642  DNMT3A; DNA (cytosine-5)-methyltransferase 3A isoform X1 [KO:K17398] [EC:2.1.1.37]
113258482  DNMT3B; DNA (cytosine-5)-methyltransferase 3B isoform X1 [KO:K17399] [EC:2.1.1.37]
113258511  AHCY; adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
113264044  AHCYL2; adenosylhomocysteinase 3 isoform X1 [KO:K01251] [EC:3.13.2.1]
113244912  AHCYL1; S-adenosylhomocysteine hydrolase-like protein 1 isoform X3 [KO:K01251] [EC:3.13.2.1]
113243329  BCAT2; branched-chain-amino-acid aminotransferase, mitochondrial isoform X1 [KO:K00826] [EC:2.6.1.42]
113257794  BCAT1; branched-chain-amino-acid aminotransferase, cytosolic isoform X1 [KO:K00826] [EC:2.6.1.42]
113260880  AGXT2; alanine--glyoxylate aminotransferase 2, mitochondrial isoform X1 [KO:K00827] [EC:2.6.1.44 2.6.1.40]
113261177  GCLC; glutamate--cysteine ligase catalytic subunit [KO:K11204] [EC:6.3.2.2]
113254391  GCLM; glutamate--cysteine ligase regulatory subunit [KO:K11205]
113258526  GSS; glutathione synthetase isoform X1 [KO:K21456] [EC:6.3.2.3]
113261607  CDO1; cysteine dioxygenase type 1 [KO:K00456] [EC:1.13.11.20]
113251814  GOT1; aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
113261997  GOT1L1; putative aspartate aminotransferase, cytoplasmic 2 [KO:K14454] [EC:2.6.1.1]
113252314  GOT2; aspartate aminotransferase, mitochondrial isoform X1 [KO:K14455] [EC:2.6.1.1]
113255974  MPST; 3-mercaptopyruvate sulfurtransferase isoform X1 [KO:K01011] [EC:2.8.1.1 2.8.1.2]
113255975  TST; thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
113257807  LDHB; L-lactate dehydrogenase B chain [KO:K00016] [EC:1.1.1.27]
113265123  LDHC; L-lactate dehydrogenase C chain isoform X1 [KO:K00016] [EC:1.1.1.27]
113265126  LDHA; L-lactate dehydrogenase A chain [KO:K00016] [EC:1.1.1.27]
113259593  L-lactate dehydrogenase A-like 6A [KO:K00016] [EC:1.1.1.27]
113258247  LOW QUALITY PROTEIN: L-lactate dehydrogenase B chain-like [KO:K00016] [EC:1.1.1.27]
113263400  LOW QUALITY PROTEIN: L-lactate dehydrogenase B chain-like [KO:K00016] [EC:1.1.1.27]
113254570  L-lactate dehydrogenase B chain-like [KO:K00016] [EC:1.1.1.27]
113251634  LOW QUALITY PROTEIN: L-lactate dehydrogenase B chain-like [KO:K00016] [EC:1.1.1.27]
113245054  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
113267810  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
113266997  SDS; L-serine dehydratase/L-threonine deaminase [KO:K17989] [EC:4.3.1.17 4.3.1.19]
113266998  SDSL; serine dehydratase-like isoform X3 [KO:K17989] [EC:4.3.1.17 4.3.1.19]
113244360  PHGDH; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
113269827  PSAT1; phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
uah00010  Glycolysis / Gluconeogenesis
uah00250  Alanine, aspartate and glutamate metabolism
uah00260  Glycine, serine and threonine metabolism
uah00290  Valine, leucine and isoleucine biosynthesis
uah00430  Taurine and hypotaurine metabolism
uah00480  Glutathione metabolism
uah00620  Pyruvate metabolism
uah00640  Propanoate metabolism
uah00770  Pantothenate and CoA biosynthesis
uah00900  Terpenoid backbone biosynthesis
uah00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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