KEGG   PATHWAY: vpk00230
Entry
vpk00230                    Pathway                                
Name
Purine metabolism - Vibrio parahaemolyticus O1:K33 CDC_K4557
Class
Metabolism; Nucleotide metabolism
Pathway map
vpk00230  Purine metabolism
vpk00230

Module
vpk_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:vpk00230]
vpk_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:vpk00230]
vpk_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:vpk00230]
vpk_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:vpk00230]
vpk_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:vpk00230]
Other DBs
GO: 0006163 0042278
Organism
Vibrio parahaemolyticus O1:K33 CDC_K4557 [GN:vpk]
Gene
M636_04450  ADP-ribose pyrophosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
M636_19670  nudF; ADP-ribose pyrophosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
M636_00425  ADP-ribose pyrophosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
M636_21070  ADP-ribose diphosphatase [KO:K08312] [EC:3.6.1.-]
M636_09780  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
M636_17590  phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
M636_18045  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
M636_10995  amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
M636_22895  phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
M636_10495  purN; phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
M636_15320  phosphoribosylglycinamide formyltransferase [KO:K08289] [EC:6.3.1.21]
M636_18510  phosphoribosylformylglycinamidine synthase [KO:K01952] [EC:6.3.5.3]
M636_10500  phosphoribosylaminoimidazole synthetase [KO:K01933] [EC:6.3.3.1]
M636_22050  phosphoribosylaminoimidazole carboxylase [KO:K01589] [EC:6.3.4.18]
M636_22055  N5-carboxyaminoimidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
M636_15490  phosphoribosylaminoimidazole-succinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
M636_16145  adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
M636_22900  purH; purine biosynthesis protein purH [KO:K00602] [EC:2.1.2.3 3.5.4.10]
M636_11020  adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
M636_03710  5'-nucleotidase [KO:K01081] [EC:3.1.3.5]
M636_18000  ushA; 5'-nucleotidase [KO:K11751] [EC:3.1.3.5 3.6.1.45]
M636_15765  ushA; 5'-nucleotidase [KO:K11751] [EC:3.1.3.5 3.6.1.45]
M636_09130  surE; stationary phase survival protein SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
M636_03620  inosine/guanosine kinase [KO:K00892] [EC:2.7.1.73]
M636_16125  inosine/guanosine kinase [KO:K00892] [EC:2.7.1.73]
M636_21475  purine nucleoside phosphorylase [KO:K03783] [EC:2.4.2.1]
M636_09785  deoD; purine nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
M636_06220  deoD; purine nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
M636_07770  hypothetical protein [KO:K09913] [EC:2.4.2.1 2.4.2.2]
M636_19040  polyphenol oxidase [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
M636_09380  hypoxanthine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
M636_18745  inosine 5'-monophosphate dehydrogenase [KO:K00088] [EC:1.1.1.205]
M636_18800  ndk; nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
M636_19070  yjjX; inosine/xanthosine triphosphatase [KO:K01529] [EC:3.6.1.73]
M636_08820  NTP phosphatase [KO:K01519] [EC:3.6.1.66]
M636_18475  xanthine phosphoribosyltransferase [KO:K00769] [EC:2.4.2.22]
M636_18740  guaA; GMP synthase [KO:K01951] [EC:6.3.5.2]
M636_05175  guanosine 5'-monophosphate oxidoreductase [KO:K00364] [EC:1.7.1.7]
M636_20985  guanylate kinase [KO:K00942] [EC:2.7.4.8]
M636_12160  ribonucleotide-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
M636_12155  ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
M636_04120  ribonucleoside triphosphate reductase [KO:K21636] [EC:1.1.98.6]
M636_17050  deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
M636_17045  5'-nucleotidase [KO:K08722] [EC:3.1.3.89]
M636_20995  bifunctional (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
M636_22245  guanosine pentaphosphate phosphohydrolase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
M636_18950  exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
M636_09090  relA; GTP pyrophosphokinase [KO:K00951] [EC:2.7.6.5]
M636_22340  cyaA; adenylate cyclase [KO:K05851] [EC:4.6.1.1]
M636_13280  adenylate cyclase [KO:K05873] [EC:4.6.1.1]
M636_23435  adenylosuccinate synthetase [KO:K01939] [EC:6.3.4.4]
M636_01160  adenylosuccinate synthetase [KO:K01939] [EC:6.3.4.4]
M636_21220  adenosine deaminase [KO:K01488] [EC:3.5.4.4]
M636_18345  LOG family protein ygdH [KO:K06966] [EC:3.2.2.10 3.2.2.-]
M636_05750  adenine deaminase [KO:K21053] [EC:3.5.4.2]
M636_02945  phosphatase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
M636_20295  cpdB; 3'-nucleotidase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
M636_17670  adk; adenylate kinase [KO:K00939] [EC:2.7.4.3]
M636_09095  mazG; nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
M636_19660  3',5'-cyclic-nucleotide phosphodiesterase [KO:K03651] [EC:3.1.4.53]
M636_20090  apaH; diadenosine tetraphosphatase [KO:K01525] [EC:3.6.1.41]
M636_20270  adenylylsulfate kinase [KO:K00860] [EC:2.7.1.25]
M636_20280  cysN; sulfate adenylyltransferase subunit 1 [KO:K00956] [EC:2.7.7.4]
M636_20285  sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
vpk00030  Pentose phosphate pathway
vpk00220  Arginine biosynthesis
vpk00250  Alanine, aspartate and glutamate metabolism
vpk00260  Glycine, serine and threonine metabolism
vpk00340  Histidine metabolism
vpk00630  Glyoxylate and dicarboxylate metabolism
vpk00730  Thiamine metabolism
vpk00740  Riboflavin metabolism
vpk00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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