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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:apn03030]
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03410 Base excision repair [PATH:apn03410]
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03420 Nucleotide excision repair [PATH:apn03420]
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03430 Mismatch repair [PATH:apn03430]
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03440 Homologous recombination [PATH:apn03440]
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03450 Non-homologous end-joining [PATH:apn03450]
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 Asphe3_04260 DNA end-binding protein Ku
Asphe3_38430 DNA polymerase LigD, polymerase domain protein
Asphe3_04250 ATP-dependent DNA ligase LigD polymerase module;ATP-dependent DNA ligase LigD ligase module;ATP-dependent DNA ligase LigD phosphoesterase module
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K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:apn03000]
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03021 Transcription machinery [BR:apn03021]
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03019 Messenger RNA biogenesis [BR:apn03019]
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03041 Spliceosome
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03011 Ribosome [BR:apn03011]
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03009 Ribosome biogenesis [BR:apn03009]
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03016 Transfer RNA biogenesis [BR:apn03016]
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03012 Translation factors [BR:apn03012]
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03110 Chaperones and folding catalysts [BR:apn03110]
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04131 Membrane trafficking [BR:apn04131]
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04121 Ubiquitin system [BR:apn04121]
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03051 Proteasome [BR:apn03051]
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03032 DNA replication proteins [BR:apn03032]
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03036 Chromosome and associated proteins [BR:apn03036]
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03400 DNA repair and recombination proteins [BR:apn03400]
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Asphe3_14830 O-6-methylguanine DNA methyltransferase
Asphe3_26070 deoxyribodipyrimidine photo-lyase type I
Asphe3_08100 Uracil-DNA glycosylase
Asphe3_14850 DNA-3-methyladenine glycosylase
Asphe3_03290 A/G-specific DNA glycosylase
Asphe3_32960 endonuclease III; DNA-(apurinic or apyrimidinic site) lyase
Asphe3_08220 DNA/RNA helicase, superfamily II
Asphe3_14670 mutator mutT protein
Asphe3_15030 ADP-ribose pyrophosphatase
Asphe3_20610 ADP-ribose pyrophosphatase
Asphe3_24280 ADP-ribose pyrophosphatase
Asphe3_16100 deoxyuridine 5'-triphosphate nucleotidohydrolase
Asphe3_41440 hypothetical protein
Asphe3_33360 hypothetical protein
Asphe3_14840 DNA-O6-methylguanine--protein-cysteine S-methyltransferase; Transcriptional regulator Ada;DNA-3-methyladenine glycosylase II
Asphe3_00180 DNA-3-methyladenine glycosylase I
Asphe3_23660 DNA-(apurinic or apyrimidinic site) lyase; Formamidopyrimidine-DNA glycosylase
Asphe3_15210 DNA-(apurinic or apyrimidinic site) lyase; Formamidopyrimidine-DNA glycosylase
Asphe3_22840 formamidopyrimidine-DNA glycosylase
Asphe3_06570 formamidopyrimidine-DNA glycosylase
Asphe3_11550 exodeoxyribonuclease III
Asphe3_05210 Exodeoxyribonuclease III
Asphe3_13060 DNA ligase, NAD-dependent
Asphe3_17800 DNA polymerase I
Asphe3_09170 excinuclease ABC, A subunit
Asphe3_17980 Excinuclease ABC subunit A
Asphe3_17880 Excinuclease ABC subunit B
Asphe3_18010 Excinuclease ABC subunit C
Asphe3_26150 DNA/RNA helicase, superfamily I
Asphe3_26180 DNA/RNA helicase, superfamily I
Asphe3_08500 ATP-dependent DNA helicase PcrA
Asphe3_28300 DNA-directed RNA polymerase subunit beta
Asphe3_28290 DNA-directed RNA polymerase subunit beta'
Asphe3_27860 DNA-directed RNA polymerase, alpha subunit
Asphe3_19880 DNA-directed RNA polymerase, omega subunit
Asphe3_12560 transcription-repair coupling factor Mfd
Asphe3_26880 Exodeoxyribonuclease VII large subunit
Asphe3_26890 Exodeoxyribonuclease VII small subunit
Asphe3_15630 DNA-directed DNA polymerase III PolC
Asphe3_00020 DNA polymerase III, beta subunit
Asphe3_19720 DNA polymerase III, delta subunit
Asphe3_07550 DNA polymerase III, delta' subunit
Asphe3_24400 DNA polymerase III epsilon subunit-like 3'-5' exonuclease
Asphe3_26210 DNA polymerase III, epsilon subunit
Asphe3_05810 DNA polymerase III, subunit gamma/tau
Asphe3_41770 single stranded DNA-binding protein
Asphe3_39320 single stranded DNA-binding protein
Asphe3_42840 single stranded DNA-binding protein
Asphe3_22960 single stranded DNA-binding protein
Asphe3_08990 T/G mismatch-specific endonuclease
Asphe3_14430 protein RecA
Asphe3_20360 Holliday junction DNA helicase subunit RuvA
Asphe3_20350 Holliday junction DNA helicase subunit RuvB
Asphe3_20370 Holliday junction endonuclease RuvC
Asphe3_19850 primosomal protein N'
Asphe3_24350 exonuclease SbcC
Asphe3_24360 Exodeoxyribonuclease I subunit D
Asphe3_03460 DNA repair protein RadA
Asphe3_00040 DNA replication and repair protein RecF
Asphe3_23740 ATP-dependent DNA helicase RecG
Asphe3_19540 DNA replication and repair protein RecO
Asphe3_05800 DNA replication and repair protein RecR
Asphe3_14990 DNA replication and repair protein RecN
Asphe3_37480 putative ATPase
Asphe3_04260 DNA end-binding protein Ku
Asphe3_38430 DNA polymerase LigD, polymerase domain protein
Asphe3_04250 ATP-dependent DNA ligase LigD polymerase module;ATP-dependent DNA ligase LigD ligase module;ATP-dependent DNA ligase LigD phosphoesterase module
Asphe3_00070 DNA gyrase subunit A
Asphe3_16020 DNA topoisomerase IV subunit A
Asphe3_00060 DNA gyrase subunit B
Asphe3_15950 type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
Asphe3_32800 DNA topoisomerase I
Asphe3_29220 topoisomerase IB
Asphe3_37520 bacterial nucleoid DNA-binding protein
Asphe3_09230 ATP-dependent DNA helicase, RecQ family
Asphe3_07250 ATP-dependent DNA helicase RecQ
Asphe3_31960 nucleotidyltransferase/DNA polymerase involved in DNA repair
Asphe3_15410 nucleotidyltransferase/DNA polymerase involved in DNA repair
Asphe3_02030 nucleotidyltransferase/DNA polymerase involved in DNA repair
Asphe3_02040 SOS response UmuD protein
Asphe3_14510 SOS-response transcriptional repressor, LexA
Asphe3_20480 DNA-directed DNA polymerase III PolC
Asphe3_14440 uncharacterized conserved protein
Asphe3_14500 putative glutamate--cysteine ligase/putative amino acid ligase
Asphe3_06580 ATP dependent helicase, Lhr family
Asphe3_28580 ADP-ribose pyrophosphatase
Asphe3_15010 NTP pyrophosphohydrolase
Asphe3_21410 ribonucleoside-diphosphate reductase class Ib alpha subunit
Asphe3_21400 ribonucleoside-diphosphate reductase class Ib beta subunit
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:apn03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Pseudarthrobacter phenanthrenivorans