KEGG   PATHWAY: amj04350
Entry
amj04350                    Pathway                                
Name
TGF-beta signaling pathway - Alligator mississippiensis (American alligator)
Description
The transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species ranging from worms and insects to mammals. A wide spectrum of cellular functions such as proliferation, apoptosis, differentiation and migration are regulated by TGF-beta family members. TGF-beta family member binds to the Type II receptor and recruits Type I, whereby Type II receptor phosphorylates and activates Type I. The Type I receptor, in turn, phosphorylates receptor-activated Smads ( R-Smads: Smad1, Smad2, Smad3, Smad5, and Smad8). Once phosphorylated, R-Smads associate with the co-mediator Smad, Smad4, and the heteromeric complex then translocates into the nucleus. In the nucleus, Smad complexes activate specific genes through cooperative interactions with other DNA-binding and coactivator (or co-repressor) proteins.
Class
Environmental Information Processing; Signal transduction
Pathway map
amj04350  TGF-beta signaling pathway
amj04350

Other DBs
GO: 0007179
Organism
Alligator mississippiensis (American alligator) [GN:amj]
Gene
102558921  CHRD; chordin [KO:K04657]
102574821  NOG2; noggin-2 [KO:K04658]
102577138  NOG; noggin [KO:K04658]
102566492  NBL1; neuroblastoma suppressor of tumorigenicity 1 [KO:K19558]
102566854  GREM2; gremlin 2, DAN family BMP antagonist [KO:K23318]
102575812  GREM1; gremlin 1, DAN family BMP antagonist [KO:K23318]
102568233  THBS1; thrombospondin 1 [KO:K16857]
102566030  DCN; decorin [KO:K04660]
102566121  FMOD; fibromodulin [KO:K08121]
102576805  LEFTY1; left-right determination factor 1 [KO:K04668]
102561473  FST; follistatin [KO:K04661]
102564323  BMP2; bone morphogenetic protein 2 [KO:K21283]
102575698  bone morphogenetic protein 2 [KO:K21283]
102574161  ADMP; bone morphogenetic protein 2 [KO:K21283]
102573848  BMP4; bone morphogenetic protein 4 [KO:K04662]
102573750  BMP6; bone morphogenetic protein 6 [KO:K16620]
102573510  INHBB; inhibin beta B subunit [KO:K22687]
102566361  MELTF; ovotransferrin [KO:K14736]
106736629  BMP5; bone morphogenetic protein 5 [KO:K04663]
102562900  BMP7; bone morphogenetic protein 7 [KO:K16621]
102559054  BMP8A; bone morphogenetic protein 8A [KO:K16622]
102560025  GDF5; growth differentiation factor 5 [KO:K04664]
102571040  GDF6; growth differentiation factor 6 [KO:K20012]
102576523  GDF7; growth differentiation factor 7 [KO:K20013]
102568833  AMH; anti-Mullerian hormone [KO:K04665]
102563354  IFNG; interferon gamma [KO:K04687]
102569751  TNF; tumor necrosis factor [KO:K03156]
102572636  THSD4; thrombospondin type 1 domain containing 4 [KO:K23377]
102570392  FBN1; fibrillin 1 [KO:K06825]
102577012  LTBP1; latent transforming growth factor beta binding protein 1 [KO:K19559]
102567067  TGFB1; transforming growth factor beta 1 [KO:K13375]
102562163  TGFB2; transforming growth factor beta 2 [KO:K13376]
102563668  TGFB3; transforming growth factor beta 3 [KO:K13377]
102567355  INHBA; inhibin beta A subunit [KO:K04667]
109283984  inhibin beta C chain-like [KO:K22688]
102575762  NODAL; nodal growth differentiation factor [KO:K04666]
106737143  BMPR1A; bone morphogenetic protein receptor type 1A [KO:K04673] [EC:2.7.11.30]
102561072  BMPR1B; bone morphogenetic protein receptor type 1B [KO:K13578] [EC:2.7.11.30]
102559894  activin receptor type-1-like [KO:K04675] [EC:2.7.11.30]
102569539  ACVR1; activin A receptor type 1 [KO:K04675] [EC:2.7.11.30]
102577319  BMPR2; bone morphogenetic protein receptor type 2 [KO:K04671] [EC:2.7.11.30]
102562921  ACVR2A; activin A receptor type 2A [KO:K04670] [EC:2.7.11.30]
102571180  HFE2; hemochromatosis type 2 (juvenile) [KO:K23100]
102567106  NEO1; neogenin 1 [KO:K06766]
102559468  TFR2; transferrin receptor 2 [KO:K23910]
102560462  TFRC; transferrin receptor [KO:K06503]
102570711  RGMA; repulsive guidance molecule family member a [KO:K23096]
102562245  RGMD; repulsive guidance molecule A [KO:K23096]
102573202  RGMB; repulsive guidance molecule family member b [KO:K06847]
102558116  AMHR2; anti-Mullerian hormone receptor type 2 [KO:K04672] [EC:2.7.11.30]
102568992  TGFBR1; transforming growth factor beta receptor 1 [KO:K04674] [EC:2.7.11.30]
102567839  TGFBR2; transforming growth factor beta receptor 2 [KO:K04388] [EC:2.7.11.30]
102573702  TGF-beta receptor type-2 [KO:K04388] [EC:2.7.11.30]
102569133  EMP3; epithelial membrane protein 3 [KO:K26257]
102558802  LRRC32; leucine rich repeat containing 32 [KO:K26316]
109283278  leucine-rich repeat-containing protein 32-like [KO:K26316]
102576466  NRROS; negative regulator of reactive oxygen species [KO:K26317]
102572242  ACVR1B; activin A receptor type 1B [KO:K13567] [EC:2.7.11.30]
102568461  ACVR2B; activin A receptor type 2B [KO:K13596] [EC:2.7.11.30]
106736618  ACVR1C; activin A receptor type 1C [KO:K13568] [EC:2.7.11.30]
102558701  BAMBI; BMP and activin membrane bound inhibitor [KO:K10162]
106737173  SMAD1; SMAD family member 1 [KO:K04676]
102564543  SMAD5; SMAD family member 5 [KO:K16790]
102570559  SMAD9; SMAD family member 9 [KO:K16791]
102564903  SMAD2; SMAD family member 2 [KO:K04500]
102564680  SMAD3; SMAD family member 3 [KO:K23605]
102572775  mothers against decapentaplegic homolog 4 [KO:K04501]
102576984  SMAD4; SMAD family member 4 [KO:K04501]
102567677  mothers against decapentaplegic homolog 6 [KO:K04677]
102564913  SMAD6; SMAD family member 6 [KO:K04677]
102573386  SMAD7; SMAD family member 7 [KO:K19631]
102571663  SMURF2; SMAD specific E3 ubiquitin protein ligase 2 [KO:K04678] [EC:2.3.2.26]
102571418  SMURF1; SMAD specific E3 ubiquitin protein ligase 1 [KO:K04678] [EC:2.3.2.26]
102561333  ZFYVE16; zinc finger FYVE-type containing 16 [KO:K04679]
102572768  ZFYVE9; zinc finger FYVE-type containing 9 [KO:K04679]
102571619  RBX1; ring-box 1 [KO:K03868] [EC:2.3.2.32]
102562508  CUL1; cullin 1 [KO:K03347]
102576679  SKP1; S-phase kinase associated protein 1 [KO:K03094]
106737342  mitogen-activated protein kinase 3 [KO:K04371] [EC:2.7.11.24]
102561718  MAPK1; mitogen-activated protein kinase 1 [KO:K04371] [EC:2.7.11.24]
109282845  mitogen-activated protein kinase 3-like [KO:K04371] [EC:2.7.11.24]
102560127  transforming protein RhoA-like [KO:K04513]
102563558  RHOA; ras homolog family member A [KO:K04513]
102558298  ROCK1; Rho associated coiled-coil containing protein kinase 1 [KO:K04514] [EC:2.7.11.1]
102571411  PPP2R1A; protein phosphatase 2 scaffold subunit Aalpha [KO:K03456]
102576713  PPP2CB; protein phosphatase 2 catalytic subunit beta [KO:K04382] [EC:3.1.3.16]
102576911  PPP2CA; protein phosphatase 2 catalytic subunit alpha [KO:K04382] [EC:3.1.3.16]
106736874  RPS6KB1; ribosomal protein S6 kinase B1 [KO:K04688] [EC:2.7.11.1]
102571014  RPS6KB2; ribosomal protein S6 kinase B2 [KO:K04688] [EC:2.7.11.1]
102575155  HAMP; hepcidin antimicrobial peptide [KO:K23106]
102569967  ID1; inhibitor of DNA binding 1, HLH protein [KO:K04680]
102568367  ID2; inhibitor of DNA binding 2, HLH protein [KO:K17693]
102573786  ID3; inhibitor of DNA binding 3, HLH protein [KO:K17694]
102559995  ID4; inhibitor of DNA binding 4, HLH protein [KO:K17695]
102575140  RBL1; RB transcriptional corepressor like 1 [KO:K04681]
102561442  E2F5; E2F transcription factor 5 [KO:K04682]
102565148  E2F4; E2F transcription factor 4 [KO:K04682]
102576155  TFDP1; transcription factor Dp-1 [KO:K04683]
106736758  EP300; E1A binding protein p300 [KO:K04498] [EC:2.3.1.48]
102571845  CREBBP; CREB binding protein [KO:K04498] [EC:2.3.1.48]
102557884  SP1; Sp1 transcription factor [KO:K04684]
102562885  SKIL; SKI like proto-oncogene [KO:K18499]
102559399  SKI; SKI proto-oncogene [KO:K26503]
106736715  SIN3A; SIN3 transcription regulator family member A [KO:K11644]
106737180  HDAC1; histone deacetylase 1 [KO:K06067] [EC:3.5.1.98]
102561334  HDAC2; histone deacetylase 2 [KO:K06067] [EC:3.5.1.98]
102560876  NCOR1; nuclear receptor corepressor 1 [KO:K04650]
102560861  TGIF1; TGFB induced factor homeobox 1 [KO:K19383]
102575993  TGIF2; TGFB induced factor homeobox 2 [KO:K19553]
102561083  MYC; v-myc avian myelocytomatosis viral oncogene homolog [KO:K04377]
102577301  PITX2; paired like homeodomain 2 [KO:K04686]
Compound
C14819  Fe3+
Reference
  Authors
Shi Y, Massague J.
  Title
Mechanisms of TGF-beta signaling from cell membrane to the nucleus.
  Journal
Cell 113:685-700 (2003)
DOI:10.1016/S0092-8674(03)00432-X
Reference
  Authors
Derynck R, Zhang YE.
  Title
Smad-dependent and Smad-independent pathways in TGF-beta family signalling.
  Journal
Nature 425:577-84 (2003)
DOI:10.1038/nature02006
Reference
  Authors
Massague J.
  Title
How cells read TGF-beta signals.
  Journal
Nat Rev Mol Cell Biol 1:169-78 (2000)
DOI:10.1038/35043051
Reference
  Authors
Siegel PM, Massague J.
  Title
Cytostatic and apoptotic actions of TGF-beta in homeostasis and cancer.
  Journal
Nat Rev Cancer 3:807-21 (2003)
DOI:10.1038/nrc1208
Reference
  Authors
Shimasaki S, Moore RK, Otsuka F, Erickson GF.
  Title
The bone morphogenetic protein system in mammalian reproduction.
  Journal
Endocr Rev 25:72-101 (2004)
DOI:10.1210/er.2003-0007
Reference
  Authors
De Robertis EM, Larrain J, Oelgeschlager M, Wessely O.
  Title
The establishment of Spemann's organizer and patterning of the vertebrate embryo.
  Journal
Nat Rev Genet 1:171-81 (2000)
DOI:10.1038/35042039
Reference
  Authors
Gumienny TL, Padgett RW.
  Title
The other side of TGF-beta superfamily signal regulation: thinking outside the cell.
  Journal
Trends Endocrinol Metab 13:295-9 (2002)
DOI:10.1016/S1043-2760(02)00615-X
Reference
  Authors
Hamada H, Meno C, Watanabe D, Saijoh Y.
  Title
Establishment of vertebrate left-right asymmetry.
  Journal
Nat Rev Genet 3:103-13 (2002)
DOI:10.1038/nrg732
Reference
  Authors
Chang H, Brown CW, Matzuk MM.
  Title
Genetic analysis of the mammalian transforming growth factor-beta superfamily.
  Journal
Endocr Rev 23:787-823 (2002)
DOI:10.1210/er.2002-0003
Reference
  Authors
Morita K, Chow KL, Ueno N.
  Title
Regulation of body length and male tail ray pattern formation of Caenorhabditis elegans by a member of TGF-beta family.
  Journal
Development 126:1337-47 (1999)
Reference
PMID:9847239
  Authors
Krishna S, Maduzia LL, Padgett RW.
  Title
Specificity of TGFbeta signaling is conferred by distinct type I receptors and their associated SMAD proteins in Caenorhabditis elegans.
  Journal
Development 126:251-60 (1999)
Reference
  Authors
Chen Y, Mironova E, Whitaker LL, Edwards L, Yost HJ, Ramsdell AF.
  Title
ALK4 functions as a receptor for multiple TGF beta-related ligands to regulate left-right axis determination and mesoderm induction in Xenopus.
  Journal
Dev Biol 268:280-94 (2004)
DOI:10.1016/j.ydbio.2003.12.035
Reference
  Authors
Onichtchouk D, Chen YG, Dosch R, Gawantka V, Delius H, Massague J, Niehrs C
  Title
Silencing of TGF-beta signalling by the pseudoreceptor BAMBI.
  Journal
Nature 401:480-5 (1999)
DOI:10.1038/46794
Reference
  Authors
Yan X, Lin Z, Chen F, Zhao X, Chen H, Ning Y, Chen YG
  Title
Human BAMBI cooperates with Smad7 to inhibit transforming growth factor-beta signaling.
  Journal
J Biol Chem 284:30097-104 (2009)
DOI:10.1074/jbc.M109.049304
Reference
PMID:8093006
  Authors
Hildebrand A, Romaris M, Rasmussen LM, Heinegard D, Twardzik DR, Border WA, Ruoslahti E
  Title
Interaction of the small interstitial proteoglycans biglycan, decorin and fibromodulin with transforming growth factor beta.
  Journal
Biochem J 302 ( Pt 2):527-34 (1994)
DOI:10.1042/bj3020527
Reference
  Authors
Soo C, Hu FY, Zhang X, Wang Y, Beanes SR, Lorenz HP, Hedrick MH, Mackool RJ, Plaas A, Kim SJ, Longaker MT, Freymiller E, Ting K
  Title
Differential expression of fibromodulin, a transforming growth factor-beta modulator, in fetal skin development and scarless repair.
  Journal
Am J Pathol 157:423-33 (2000)
DOI:10.1016/s0002-9440(10)64555-5
Reference
  Authors
Anderson GJ, Frazer DM
  Title
Iron metabolism meets signal transduction.
  Journal
Nat Genet 38:503-4 (2006)
DOI:10.1038/ng0506-503
Reference
  Authors
Canali S, Core AB, Zumbrennen-Bullough KB, Merkulova M, Wang CY, Schneyer AL, Pietrangelo A, Babitt JL
  Title
Activin B Induces Noncanonical SMAD1/5/8 Signaling via BMP Type I Receptors in Hepatocytes: Evidence for a Role in Hepcidin Induction by Inflammation in Male Mice.
  Journal
Endocrinology 157:1146-62 (2016)
DOI:10.1210/en.2015-1747
Reference
  Authors
Ganz T, Nemeth E
  Title
Iron homeostasis in host defence and inflammation.
  Journal
Nat Rev Immunol 15:500-10 (2015)
DOI:10.1038/nri3863
Reference
  Authors
Babitt JL, Zhang Y, Samad TA, Xia Y, Tang J, Campagna JA, Schneyer AL, Woolf CJ, Lin HY
  Title
Repulsive guidance molecule (RGMa), a DRAGON homologue, is a bone morphogenetic protein co-receptor.
  Journal
J Biol Chem 280:29820-7 (2005)
DOI:10.1074/jbc.M503511200
Reference
  Authors
Samad TA, Rebbapragada A, Bell E, Zhang Y, Sidis Y, Jeong SJ, Campagna JA, Perusini S, Fabrizio DA, Schneyer AL, Lin HY, Brivanlou AH, Attisano L, Woolf CJ
  Title
DRAGON, a bone morphogenetic protein co-receptor.
  Journal
J Biol Chem 280:14122-9 (2005)
DOI:10.1074/jbc.M410034200
Reference
  Authors
Vogt AS, Arsiwala T, Mohsen M, Vogel M, Manolova V, Bachmann MF
  Title
On Iron Metabolism and Its Regulation.
  Journal
Int J Mol Sci 22:ijms22094591 (2021)
DOI:10.3390/ijms22094591
Reference
  Authors
Ikushima H, Miyazono K
  Title
TGFbeta signalling: a complex web in cancer progression.
  Journal
Nat Rev Cancer 10:415-24 (2010)
DOI:10.1038/nrc2853
Related
pathway
amj04010  MAPK signaling pathway
amj04110  Cell cycle
amj04120  Ubiquitin mediated proteolysis
amj04210  Apoptosis
KO pathway
ko04350   
LinkDB

DBGET integrated database retrieval system