KEGG   PATHWAY: bspl03008
Entry
bspl03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Betta splendens (Siamese fighting fish)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
bspl03008  Ribosome biogenesis in eukaryotes
bspl03008

Organism
Betta splendens (Siamese fighting fish) [GN:bspl]
Gene
114842245  [KO:K01981]
114842246  [KO:K01981]
114842253  [KO:K01981]
114842254  [KO:K01981]
114842256  [KO:K01981]
114842257  [KO:K01981]
114842260  [KO:K01981]
114842262  [KO:K01981]
114842264  [KO:K01981]
114842267  [KO:K01981]
114842269  [KO:K01981]
114842271  [KO:K01981]
114842273  [KO:K01981]
114842278  [KO:K01981]
114842279  [KO:K01981]
114842280  [KO:K01981]
114842282  [KO:K01981]
114842283  [KO:K01981]
114842285  [KO:K01981]
114842286  [KO:K01981]
114842288  [KO:K01981]
114842289  [KO:K01981]
114842290  [KO:K01981]
114842293  [KO:K01981]
114842298  [KO:K01981]
114842301  [KO:K01981]
114842307  [KO:K01981]
114842308  [KO:K01981]
114842309  [KO:K01981]
114842313  [KO:K01981]
114842316  [KO:K01981]
114842318  [KO:K01981]
114842322  [KO:K01981]
114842324  [KO:K01981]
114842378  [KO:K01981]
114842379  [KO:K01981]
114842382  [KO:K01981]
114842383  [KO:K01981]
114842385  [KO:K01981]
114842386  [KO:K01981]
114842387  [KO:K01981]
114842388  [KO:K01981]
114842428  rpp38; ribonuclease P protein subunit p38 [KO:K14523] [EC:3.1.26.5]
114842474  [KO:K03115]
114842529  [KO:K14563] [EC:2.1.1.-]
114842947  pwp2h; PWP2 small subunit processome component [KO:K14558]
114842965  emg1; ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
114843256  pop1; LOW QUALITY PROTEIN: ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
114843424  [KO:K03097] [EC:2.7.11.1]
114843457  [KO:K14563] [EC:2.1.1.-]
114843496  gnl2; nucleolar GTP-binding protein 2 [KO:K14537]
114843629  rpp25l; ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
114843755  [KO:K01981]
114843756  [KO:K01981]
114844086  rpp40; ribonuclease P protein subunit p40 isoform X1 [KO:K14530] [EC:3.1.26.5]
114844174  gtpbp4; nucleolar GTP-binding protein 1 [KO:K06943]
114844456  imp3; U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
114844483  riok1; serine/threonine-protein kinase RIO1 isoform X1 [KO:K07178] [EC:2.7.11.1]
114844603  xrn1; 5'-3' exoribonuclease 1 isoform X1 [KO:K12618] [EC:3.1.13.-]
114845648  imp4; U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
114845672  heatr1; HEAT repeat-containing protein 1 [KO:K14550]
114845864  rpp30; ribonuclease P protein subunit p30 isoform X1 [KO:K03539] [EC:3.1.26.5]
114845923  [KO:K12845]
114846141  ak6; adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
114846317  bms1; LOW QUALITY PROTEIN: ribosome biogenesis protein BMS1 homolog [KO:K14569]
114847245  wdr75; WD repeat-containing protein 75 [KO:K14552]
114847257  wdr3; WD repeat-containing protein 3 [KO:K14556]
114847580  si:dkey-251i10.3; U3 small nucleolar RNA-associated protein 14 homolog A [KO:K14567]
114847851  [KO:K01981]
114847854  [KO:K01981]
114847860  [KO:K01981]
114847861  [KO:K01981]
114847862  [KO:K01981]
114847864  [KO:K01981]
114847867  [KO:K01981]
114847871  [KO:K01981]
114847872  [KO:K01981]
114847874  [KO:K01981]
114847876  [KO:K01981]
114847877  [KO:K01981]
114847879  [KO:K01981]
114847880  [KO:K01981]
114847881  [KO:K01981]
114847892  [KO:K01981]
114847904  [KO:K01981]
114848145  fcf1; rRNA-processing protein FCF1 homolog [KO:K14566]
114848192  nop10; H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
114848335  wdr43; WD repeat-containing protein 43 [KO:K14546]
114848476  dkc1; H/ACA ribonucleoprotein complex subunit DKC1 isoform X1 [KO:K11131] [EC:5.4.99.-]
114849819  mdn1; midasin [KO:K14572]
114849975  xrn2; 5'-3' exoribonuclease 2 isoform X1 [KO:K12619] [EC:3.1.13.-]
114850478  [KO:K01981]
114850479  [KO:K01981]
114850483  [KO:K01981]
114850484  [KO:K01981]
114850485  [KO:K01981]
114850494  [KO:K01981]
114850508  [KO:K01981]
114850509  [KO:K01981]
114850510  [KO:K01981]
114850511  [KO:K01981]
114850699  [KO:K01981]
114850700  [KO:K01981]
114850953  [KO:K01981]
114851131  pop7; ribonuclease P protein subunit p20 [KO:K14527] [EC:3.1.26.5]
114851160  nop58; nucleolar protein 58 isoform X1 [KO:K14565]
114851423  [KO:K01981]
114851424  [KO:K01981]
114851425  [KO:K01981]
114851426  [KO:K01981]
114851427  [KO:K01981]
114851428  [KO:K01981]
114851429  [KO:K01981]
114851430  [KO:K01981]
114851431  [KO:K01981]
114851432  [KO:K01981]
114851433  [KO:K01981]
114851434  [KO:K01981]
114851435  [KO:K01981]
114851436  [KO:K01981]
114851437  [KO:K01981]
114851438  [KO:K01981]
114851439  [KO:K01981]
114851440  [KO:K01981]
114851441  [KO:K01981]
114851442  [KO:K01981]
114851443  [KO:K01981]
114851444  [KO:K01981]
114851445  [KO:K01981]
114851446  [KO:K01981]
114851447  [KO:K01981]
114851449  [KO:K01981]
114851451  [KO:K01981]
114851452  [KO:K01981]
114851453  [KO:K01981]
114851457  [KO:K01981]
114851458  [KO:K01981]
114851459  [KO:K01981]
114851460  [KO:K01981]
114851461  [KO:K01981]
114851462  [KO:K01981]
114851463  [KO:K01981]
114851464  [KO:K01981]
114851465  [KO:K01981]
114851466  [KO:K01981]
114851471  [KO:K01981]
114851472  [KO:K01981]
114851473  [KO:K01981]
114851474  [KO:K01981]
114851475  [KO:K01981]
114851477  [KO:K01981]
114851479  [KO:K01981]
114851480  [KO:K01981]
114851483  [KO:K01981]
114851485  [KO:K01981]
114851486  [KO:K01981]
114851490  [KO:K01981]
114851495  [KO:K01981]
114851496  [KO:K01981]
114851497  [KO:K01981]
114851498  [KO:K01981]
114851501  [KO:K01981]
114851502  [KO:K01981]
114851504  [KO:K01981]
114851505  [KO:K01981]
114851507  [KO:K01981]
114851509  [KO:K01981]
114851510  [KO:K01981]
114851511  [KO:K01981]
114851512  [KO:K01981]
114851513  [KO:K01981]
114851514  [KO:K01981]
114851519  [KO:K14483]
114851520  [KO:K14483]
114851521  [KO:K01981]
114851522  [KO:K14483]
114851533  [KO:K01981]
114851539  [KO:K01981]
114851545  [KO:K01981]
114851556  [KO:K01981]
114851567  [KO:K01981]
114851579  [KO:K01981]
114851590  [KO:K01981]
114851594  [KO:K01981]
114851595  [KO:K01981]
114851596  [KO:K01981]
114851597  [KO:K01981]
114851598  [KO:K01981]
114851599  [KO:K01981]
114851600  [KO:K01981]
114851601  [KO:K01981]
114851602  [KO:K01981]
114851603  [KO:K01981]
114851605  [KO:K01981]
114851606  [KO:K01981]
114851607  [KO:K01981]
114851608  [KO:K01981]
114851609  [KO:K01981]
114851610  [KO:K01981]
114851611  [KO:K01981]
114851612  [KO:K01981]
114851613  [KO:K01981]
114851614  [KO:K01981]
114851615  [KO:K01981]
114851616  [KO:K01981]
114851617  [KO:K01981]
114851618  [KO:K01981]
114851619  [KO:K01981]
114851620  [KO:K01981]
114851621  [KO:K01981]
114851622  [KO:K01981]
114851623  [KO:K01981]
114851624  [KO:K01981]
114851625  [KO:K01981]
114851626  [KO:K01981]
114851627  [KO:K01981]
114851929  [KO:K14525] [EC:3.1.26.5]
114851934  efl1; elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
114851956  mphosph10; U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
114852084  nob1; RNA-binding protein NOB1 isoform X1 [KO:K11883]
114852260  [KO:K03097] [EC:2.7.11.1]
114852444  pop4; ribonuclease P protein subunit p29 [KO:K03538] [EC:3.1.26.5]
114852980  drosha; ribonuclease 3 isoform X1 [KO:K03685] [EC:3.1.26.3]
114854189  rexo1; RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
114854380  lsg1; large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
114855168  csnk2a4; casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
114855238  nop56; nucleolar protein 56 [KO:K14564]
114855540  eif6; eukaryotic translation initiation factor 6 [KO:K03264]
114855580  [KO:K14570] [EC:3.1.-.-]
114855590  gnl3l; guanine nucleotide-binding protein-like 3-like protein [KO:K14538]
114855714  gnl3; guanine nucleotide-binding protein-like 3 [KO:K14538]
114856854  csnk2a2b; casein kinase II subunit alpha' [KO:K03097] [EC:2.7.11.1]
114857205  rpp25a; ribonuclease P protein subunit p25a [KO:K14525] [EC:3.1.26.5]
114857237  nat10; RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
114857393  rbm28; RNA-binding protein 28 [KO:K14573]
114857770  utp4; U3 small nucleolar RNA-associated protein 4 homolog isoform X1 [KO:K14548]
114860200  utp18; U3 small nucleolar RNA-associated protein 18 homolog isoform X1 [KO:K14553]
114860279  rrp7a; ribosomal RNA-processing protein 7 homolog A [KO:K14545]
114860461  tbl3; transducin beta-like protein 3 [KO:K14555]
114862056  utp6; U3 small nucleolar RNA-associated protein 6 homolog isoform X1 [KO:K14557]
114862687  zgc:152968; RNA exonuclease 1 homolog isoform X3 [KO:K14570] [EC:3.1.-.-]
114862714  nol6; nucleolar protein 6 [KO:K14544]
114862922  xpo1a; exportin-1 [KO:K14290]
114862932  pop5; ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
114863005  riok2; serine/threonine-protein kinase RIO2 [KO:K07179] [EC:2.7.11.1]
114863045  utp15; U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
114863886  [KO:K01981]
114863892  [KO:K01981]
114863898  [KO:K01981]
114863903  [KO:K01981]
114863907  [KO:K01981]
114863918  [KO:K01981]
114863924  [KO:K01981]
114863929  [KO:K01981]
114863940  [KO:K01981]
114863942  nxt2; NTF2-related export protein 2 [KO:K14285]
114863949  [KO:K01981]
114863961  [KO:K01981]
114863971  [KO:K01981]
114863977  [KO:K01981]
114863983  [KO:K01981]
114863987  [KO:K01981]
114863994  [KO:K01981]
114864006  [KO:K01981]
114864010  [KO:K01981]
114864013  [KO:K01981]
114864019  [KO:K01981]
114864024  [KO:K01981]
114864037  [KO:K01981]
114864041  [KO:K01981]
114864047  [KO:K01981]
114864053  [KO:K01981]
114864056  [KO:K01981]
114864061  [KO:K01981]
114864065  [KO:K01981]
114864069  [KO:K01981]
114864117  [KO:K01981]
114864173  [KO:K01981]
114864224  [KO:K01981]
114864281  [KO:K01981]
114864312  ran; GTP-binding nuclear protein Ran [KO:K07936]
114864329  [KO:K01981]
114864373  [KO:K01981]
114864391  [KO:K01981]
114864395  [KO:K01981]
114864414  [KO:K14483]
114864419  [KO:K14483]
114864425  [KO:K14483]
114864432  [KO:K14483]
114864440  [KO:K14483]
114864445  [KO:K14483]
114864456  [KO:K01981]
114864472  gar1; H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
114864509  [KO:K01981]
114864513  [KO:K01981]
114864518  [KO:K01981]
114864525  [KO:K01981]
114864535  [KO:K01981]
114864541  [KO:K01981]
114864547  [KO:K01981]
114864553  [KO:K01981]
114864562  [KO:K01981]
114864566  [KO:K01981]
114864583  [KO:K01981]
114864588  [KO:K01981]
114864593  [KO:K01981]
114864599  [KO:K01981]
114864613  [KO:K01981]
114864620  [KO:K01981]
114864630  [KO:K01981]
114864634  [KO:K01981]
114864637  [KO:K01981]
114864645  [KO:K01981]
114864649  [KO:K01981]
114864651  [KO:K01981]
114864658  [KO:K01981]
114864672  [KO:K01981]
114864681  [KO:K01981]
114864694  nxf1a; nuclear RNA export factor 1 isoform X1 [KO:K14284]
114864993  spata5; ribosome biogenesis protein SPATA5 [KO:K14575]
114865261  csnk2b; casein kinase II subunit beta [KO:K03115]
114866312  [KO:K01981]
114866821  rcl1; RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
114867120  wdr36; WD repeat-containing protein 36 [KO:K14554]
114868029  sbds; ribosome maturation protein SBDS [KO:K14574]
114868362  nmd3; 60S ribosomal export protein NMD3 [KO:K07562]
114868743  [KO:K01981]
114868751  [KO:K01981]
114868996  nhp2; H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
114869544  smfn; small fragment nuclease isoform X2 [KO:K13288] [EC:3.1.-.-]
114870101  [KO:K01981]
114870150  [KO:K01981]
114870152  [KO:K01981]
114870155  [KO:K01981]
114870156  [KO:K01981]
114870158  [KO:K01981]
114870159  [KO:K01981]
114870160  [KO:K01981]
114870162  [KO:K01981]
114870165  [KO:K01981]
114870166  [KO:K01981]
114870167  [KO:K01981]
114870168  [KO:K01981]
114870169  [KO:K01981]
114870170  [KO:K01981]
114870171  [KO:K01981]
114870172  [KO:K01981]
114870173  [KO:K01981]
114870174  [KO:K01981]
114870177  [KO:K01981]
114870178  [KO:K01981]
114870179  [KO:K01981]
114870180  [KO:K01981]
114870181  [KO:K01981]
114870461  nvl; nuclear valosin-containing protein-like isoform X1 [KO:K14571]
114870474  xpo1b; exportin-1 isoform X1 [KO:K14290]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
bspl03010  Ribosome
KO pathway
ko03008   

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