KEGG   PATHWAY: cbr03018
Entry
cbr03018                    Pathway                                
Name
RNA degradation - Caenorhabditis briggsae (nematode)
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
cbr03018  RNA degradation
cbr03018

Other DBs
GO: 0006401
Organism
Caenorhabditis briggsae (nematode) [GN:cbr]
Gene
CBG_01756  Cbr-dcap-2; Protein CBR-DCAP-2 [KO:K12613] [EC:3.6.1.62]
CBG_01776  Cbr-lsm-3; Protein CBR-LSM-3 [KO:K12622]
CBG_01825  Cbr-exos-4.1; Protein CBR-EXOS-4.1, isoform a [KO:K11600]
CBG_02020  [KO:K00850] [EC:2.7.1.11]
CBG_02207  Cbr-pab-1; Protein CBR-PAB-1 [KO:K13126]
CBG_02224  Cbr-exos-3; Protein CBR-EXOS-3 [KO:K03681]
CBG_02963  Cbr-lsm-1; Protein CBR-LSM-1 [KO:K12620]
CBG_03059  Cbr-crn-5; Protein CBR-CRN-5 [KO:K12590]
CBG_03060  Cbr-crn-3; Protein CBR-CRN-3 [KO:K12591] [EC:3.1.13.-]
CBG_03125  Cbr-patr-1; Protein CBR-PATR-1 [KO:K12617]
CBG_03214  Cbr-enol-1; Protein CBR-ENOL-1 [KO:K01689] [EC:4.2.1.11]
CBG_03318  Cbr-ccr-4; Protein CBR-CCR-4 [KO:K12603] [EC:3.1.13.4]
CBG_03473  Cbr-mtr-4; Protein CBR-MTR-4 [KO:K12598] [EC:3.6.4.13]
CBG_03676  Cbr-ntl-2; Protein CBR-NTL-2 [KO:K12605]
CBG_05449  Cbr-exos-2; Protein CBR-EXOS-2 [KO:K03679]
CBG_05470  Cbr-lsm-8; Protein CBR-LSM-8 [KO:K12627]
CBG_05573  Cbr-exos-7; Protein CBR-EXOS-7 [KO:K12589]
CBG_05961  Cbr-lsm-7; Protein CBR-LSM-7 [KO:K12626]
CBG_06018  Cbr-skih-2; Protein CBR-SKIH-2 [KO:K12599] [EC:3.6.4.13]
CBG_07431  Cbr-pab-2; Protein CBR-PAB-2 [KO:K13126]
CBG_08416  Cbr-dcap-1; Protein CBR-DCAP-1 [KO:K12611] [EC:3.-.-.-]
CBG_08556  [KO:K01148] [EC:3.1.13.4]
CBG_08827  Cbr-hsp-6; Protein CBR-HSP-6 [KO:K04043]
CBG_09177  Cbr-cgh-1; Protein CBR-CGH-1 [KO:K12614] [EC:3.6.4.13]
CBG_09986  Cbr-panl-3; Protein CBR-PANL-3 [KO:K12572]
CBG_11701  Cbr-hsp-60; Protein CBR-HSP-60 [KO:K04077] [EC:5.6.1.7]
CBG_12385  Cbr-fog-3; Protein CBR-FOG-3 [KO:K14443]
CBG_12446  Cbr-gld-4; Protein CBR-GLD-4 [KO:K03514] [EC:2.7.7.19]
CBG_12933  Cbr-dcs-1; Protein CBR-DCS-1 [KO:K12584] [EC:3.6.1.59]
CBG_13115  Cbr-lsm-4; Protein CBR-LSM-4 [KO:K12623]
CBG_13301  Cbr-ntl-3; Protein CBR-NTL-3 [KO:K12580]
CBG_13315  [KO:K12581]
CBG_13320  [KO:K12581]
CBG_13499  Cbr-dis-3; Protein CBR-DIS-3 [KO:K12585] [EC:3.1.13.-]
CBG_15142  [KO:K00962] [EC:2.7.7.8]
CBG_16483  Cbr-let-711; Protein CBR-LET-711 [KO:K12604]
CBG_16490  [KO:K12571] [EC:3.1.13.4]
CBG_16619  Cbr-exos-9; Protein CBR-EXOS-9 [KO:K12586]
CBG_17704  Cbr-ntl-4; Protein CBR-NTL-4 [KO:K10643] [EC:2.3.2.27]
CBG_18198  Cbr-ntl-9; Protein CBR-NTL-9 [KO:K12606]
CBG_18230  Cbr-exos-1; Protein CBR-EXOS-1 [KO:K07573]
CBG_18602  Cbr-lsm-5; Protein CBR-LSM-5 [KO:K12624]
CBG_19122  [KO:K00850] [EC:2.7.1.11]
CBG_19575  [KO:K12593]
CBG_20837  Cbr-xrn-1; Protein CBR-XRN-1 [KO:K12618] [EC:3.1.13.-]
CBG_20900  Cbr-xrn-2; Protein CBR-XRN-2 [KO:K12619] [EC:3.1.13.-]
CBG_22150  Cbr-lsm-6; Protein CBR-LSM-6 [KO:K12625]
CBG_24565  [KO:K12571] [EC:3.1.13.4]
CBG_25775  [KO:K12592]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
cbr03015  mRNA surveillance pathway
KO pathway
ko03018   

DBGET integrated database retrieval system