KEGG   PATHWAY: myd04120
Entry
myd04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Myotis davidii (David's myotis)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
myd04120  Ubiquitin mediated proteolysis
myd04120

Other DBs
GO: 0016567
Organism
Myotis davidii (David's myotis) [GN:myd]
Gene
102751534  UBA3; ubiquitin like modifier activating enzyme 3 [KO:K10686] [EC:6.2.1.64]
102751864  NHLRC1; NHL repeat containing E3 ubiquitin protein ligase 1 [KO:K10602] [EC:2.3.2.27]
102751887  UBA2; ubiquitin like modifier activating enzyme 2 [KO:K10685] [EC:6.2.1.45]
102751888  CUL2; cullin 2 [KO:K03870]
102752054  ANAPC2; anaphase promoting complex subunit 2 [KO:K03349]
102752072  ANAPC13; anaphase promoting complex subunit 13 [KO:K12456]
102752250  RHOBTB2; Rho related BTB domain containing 2 [KO:K07868]
102752485  ANAPC5; anaphase promoting complex subunit 5 [KO:K03352]
102752745  UBE2M; ubiquitin conjugating enzyme E2 M [KO:K10579] [EC:2.3.2.34]
102752770  [KO:K03870]
102752909  BTRC; beta-transducin repeat containing E3 ubiquitin protein ligase [KO:K03362]
102753269  [KO:K25228]
102753326  ANAPC7; anaphase promoting complex subunit 7 [KO:K03354]
102753596  KEAP1; kelch like ECH associated protein 1 [KO:K10456]
102753715  UBE2D2; ubiquitin conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
102753824  RCHY1; ring finger and CHY zinc finger domain containing 1 [KO:K10144] [EC:2.3.2.27]
102753904  UBA1; ubiquitin like modifier activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
102754148  UBE4A; ubiquitination factor E4A [KO:K10596] [EC:2.3.2.27]
102754641  BIRC6; baculoviral IAP repeat containing 6 [KO:K10586] [EC:2.3.2.23]
102754672  HUWE1; HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase [KO:K10592] [EC:2.3.2.26]
102755134  UBE2U; ubiquitin conjugating enzyme E2 U (putative) [KO:K10584] [EC:2.3.2.23]
102755304  UBE3A; ubiquitin protein ligase E3A [KO:K10587] [EC:2.3.2.26]
102755332  XIAP; X-linked inhibitor of apoptosis [KO:K04725] [EC:2.3.2.27]
102755365  UBE2A; ubiquitin conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
102755374  NEDD4L; neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase [KO:K13305] [EC:2.3.2.26]
102755514  UBE3C; ubiquitin protein ligase E3C [KO:K10589] [EC:2.3.2.26]
102755604  UBE2Z; ubiquitin conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
102755722  PIAS1; protein inhibitor of activated STAT 1 [KO:K04706] [EC:2.3.2.-]
102755971  UBE2B; ubiquitin conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
102756110  PIAS2; protein inhibitor of activated STAT 2 [KO:K16063] [EC:2.3.2.-]
102756231  HERC1; HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 [KO:K10594] [EC:2.3.2.26]
102756465  ANAPC15; anaphase promoting complex subunit 15 [KO:K25228]
102756511  DDB2; damage specific DNA binding protein 2 [KO:K10140]
102756512  HERC2; HECT and RLD domain containing E3 ubiquitin protein ligase 2 [KO:K10595] [EC:2.3.2.26]
102756513  SKP1; S-phase kinase associated protein 1 [KO:K03094]
102756551  UBE2R2; ubiquitin conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
102756797  TRIM32; tripartite motif containing 32 [KO:K10607] [EC:2.3.2.27]
102757223  HERC4; HECT and RLD domain containing E3 ubiquitin protein ligase 4 [KO:K10615] [EC:2.3.2.26]
102757339  UBE2Q2; ubiquitin conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
102757524  [KO:K03363]
102757729  ANAPC1; anaphase promoting complex subunit 1 [KO:K03348]
102757897  UBE2F; ubiquitin conjugating enzyme E2 F (putative) [KO:K10687] [EC:2.3.2.34]
102757960  PARK2; parkin RBR E3 ubiquitin protein ligase [KO:K04556] [EC:2.3.2.31]
102758039  UBE2E1; ubiquitin conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
102758055  UBE2Q1; ubiquitin conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
102758312  UBE2E2; ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
102758704  FZR1; fizzy/cell division cycle 20 related 1 [KO:K03364]
102758914  UBE2G1; ubiquitin conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
102758917  UBE3B; ubiquitin protein ligase E3B [KO:K10588] [EC:2.3.2.26]
102759029  FBXW11; F-box and WD repeat domain containing 11 [KO:K03362]
102759198  CDC34; cell division cycle 34 [KO:K02207] [EC:2.3.2.23]
102759572  TRIP12; thyroid hormone receptor interactor 12 [KO:K10590] [EC:2.3.2.26]
102759738  UBE2G2; ubiquitin conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
102759807  DDB1; damage specific DNA binding protein 1 [KO:K10610]
102759944  CBLB; Cbl proto-oncogene B [KO:K22517] [EC:2.3.2.27]
102759962  CUL4B; cullin 4B [KO:K10609]
102759984  UBE2L6; ubiquitin conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
102760187  DET1; de-etiolated homolog 1 (Arabidopsis) [KO:K10571]
102760225  RHOBTB1; Rho related BTB domain containing 1 [KO:K07868]
102760373  CDC27; cell division cycle 27 [KO:K03350]
102760790  RBX1; ring-box 1 [KO:K03868] [EC:2.3.2.32]
102761297  CBLC; Cbl proto-oncogene C [KO:K22518] [EC:2.3.2.27]
102761452  NEDD4; neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase [KO:K10591] [EC:2.3.2.26]
102761527  UBE2J2; ubiquitin conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
102761726  BRCA1; BRCA1, DNA repair associated [KO:K10605] [EC:2.3.2.27]
102762106  CDC23; cell division cycle 23 [KO:K03355]
102762252  ERCC8; ERCC excision repair 8, CSA ubiquitin ligase complex subunit [KO:K10570]
102762636  KLHL9; kelch like family member 9 [KO:K10447]
102762669  UBE2H; ubiquitin conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
102762760  UBE2S; ubiquitin conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
102762782  UBE2O; ubiquitin conjugating enzyme E2 O [KO:K10581] [EC:2.3.2.24]
102762893  AIRE; autoimmune regulator [KO:K10603]
102762932  UBE2L3; ubiquitin conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
102763080  CBL; Cbl proto-oncogene [KO:K04707] [EC:2.3.2.27]
102763181  UBOX5; U-box domain containing 5 [KO:K10600]
102763276  CUL7; cullin 7 [KO:K10613]
102763745  ANAPC10; anaphase promoting complex subunit 10 [KO:K03357]
102763786  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
102763817  PPIL2; peptidylprolyl isomerase like 2 [KO:K10598] [EC:5.2.1.8]
102763819  CUL4A; cullin 4A [KO:K10609]
102763823  FBXW7; F-box and WD repeat domain containing 7 [KO:K10260]
102763835  CUL5; cullin 5 [KO:K10612]
102764062  WWP2; WW domain containing E3 ubiquitin protein ligase 2 [KO:K05630] [EC:2.3.2.26]
102764292  WWP1; WW domain containing E3 ubiquitin protein ligase 1 [KO:K05633] [EC:2.3.2.26]
102764371  FBXO2; F-box protein 2 [KO:K10099]
102764816  UBB; ubiquitin B [KO:K04551]
102764876  FBXO4; F-box protein 4 [KO:K10291]
102765160  PIAS4; protein inhibitor of activated STAT 4 [KO:K16065] [EC:2.3.2.27]
102765225  PRPF19; pre-mRNA processing factor 19 [KO:K10599] [EC:2.3.2.27]
102765231  CDC16; cell division cycle 16 [KO:K03353]
102765630  ELOB; elongin B [KO:K03873]
102765934  TRAF6; TNF receptor associated factor 6 [KO:K03175] [EC:2.3.2.27]
102766257  SMURF1; SMAD specific E3 ubiquitin protein ligase 1 [KO:K04678] [EC:2.3.2.26]
102766542  [KO:K04552] [EC:2.3.2.23]
102766746  RFWD2; ring finger and WD repeat domain 2 [KO:K10143] [EC:2.3.2.27]
102766823  ITCH; itchy E3 ubiquitin protein ligase [KO:K05632] [EC:2.3.2.26]
102767493  UBE2I; ubiquitin conjugating enzyme E2 I [KO:K10577]
102767512  HERC3; HECT and RLD domain containing E3 ubiquitin protein ligase 3 [KO:K10614] [EC:2.3.2.26]
102767682  SIAH1; siah E3 ubiquitin protein ligase 1 [KO:K04506] [EC:2.3.2.27]
102767724  FBXW8; F-box and WD repeat domain containing 8 [KO:K10264]
102767943  UBE2J1; ubiquitin conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
102767945  FANCL; Fanconi anemia complementation group L [KO:K10606] [EC:2.3.2.27]
102768661  CDC26; cell division cycle 26 [KO:K03359]
102769723  ANAPC4; anaphase promoting complex subunit 4 [KO:K03351]
102769745  UBE2C; ubiquitin conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
102769898  UBE2N; ubiquitin conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
102769929  UBE2D3; ubiquitin conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
102770155  SMURF2; SMAD specific E3 ubiquitin protein ligase 2 [KO:K04678] [EC:2.3.2.26]
102770205  UBA7; ubiquitin like modifier activating enzyme 7 [KO:K10698] [EC:6.2.1.45]
102770564  SKP2; S-phase kinase associated protein 2 [KO:K03875]
102770567  CDC20; cell division cycle 20 [KO:K03363]
102771022  TRIM37; tripartite motif containing 37 [KO:K10608] [EC:2.3.2.27]
102771027  [KO:K02927]
102771162  MDM2; MDM2 proto-oncogene [KO:K06643] [EC:2.3.2.27]
102771342  [KO:K02927]
102771406  CUL1; cullin 1 [KO:K03347]
102771558  [KO:K04506] [EC:2.3.2.27]
102771647  UBE4B; ubiquitination factor E4B [KO:K10597] [EC:2.3.2.27]
102771802  RPS27A; ribosomal protein S27a [KO:K02977]
102771806  UBR5; ubiquitin protein ligase E3 component n-recognin 5 [KO:K10593] [EC:2.3.2.26]
102771967  BIRC2; baculoviral IAP repeat containing 2 [KO:K16060]
102771987  [KO:K10580] [EC:2.3.2.23]
102772088  ANAPC16; anaphase promoting complex subunit 16 [KO:K25229]
102772271  [KO:K03870]
102772449  BIRC3; baculoviral IAP repeat containing 3 [KO:K16060]
102772456  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
102773238  UBE2QL1; ubiquitin conjugating enzyme E2 Q family like 1 [KO:K10582] [EC:2.3.2.23]
102773247  PIAS3; protein inhibitor of activated STAT 3 [KO:K16064] [EC:2.3.2.-]
102773513  UBA52; ubiquitin A-52 residue ribosomal protein fusion product 1 [KO:K02927]
102773565  SYVN1; synoviolin 1 [KO:K10601] [EC:2.3.2.27]
102773612  UBE2K; ubiquitin conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
102773634  MID1; midline 1 [KO:K08285] [EC:2.3.2.27]
102773804  KLHL13; kelch like family member 13 [KO:K10447]
102774689  STUB1; STIP1 homology and U-box containing protein 1 [KO:K09561] [EC:2.3.2.27]
102774697  UBE2W; ubiquitin conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
102774855  UBE2E3; ubiquitin conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
102774894  SAE1; SUMO1 activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
102774902  UBA6; ubiquitin like modifier activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
102774962  CUL3; cullin 3 [KO:K03869]
102774993  UBE2D4; ubiquitin conjugating enzyme E2 D4 (putative) [KO:K06689] [EC:2.3.2.23]
102775019  UBE2D1; ubiquitin conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
102775089  [KO:K06689] [EC:2.3.2.23]
102775113  MGRN1; mahogunin ring finger 1 [KO:K10604] [EC:2.3.2.27]
102775265  ELOC; elongin C [KO:K03872]
102775373  PML; promyelocytic leukemia [KO:K10054] [EC:2.3.2.-]
107182127  ANAPC11; anaphase promoting complex subunit 11 [KO:K03358]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
myd03050  Proteasome
KO pathway
ko04120   

DBGET integrated database retrieval system