KEGG   PATHWAY: nai03040
Entry
nai03040                    Pathway                                
Name
Spliceosome - Necator americanus (New World hookworm)
Description
After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.
Class
Genetic Information Processing; Transcription
Pathway map
nai03040  Spliceosome
nai03040

Other DBs
GO: 0005681
Organism
Necator americanus (New World hookworm) [GN:nai]
Gene
NECAME_00222  [KO:K12625]
NECAME_00396  [KO:K12869]
NECAME_00403  [KO:K12893]
NECAME_00436  [KO:K12811] [EC:5.6.2.7]
NECAME_00439  [KO:K12865]
NECAME_00454  [KO:K12627]
NECAME_00455  [KO:K12627]
NECAME_00814  [KO:K12877]
NECAME_00826  [KO:K12820] [EC:5.6.2.6]
NECAME_00895  [KO:K10599] [EC:2.3.2.27]
NECAME_01311  [KO:K12875]
NECAME_01404  [KO:K14277]
NECAME_01408  [KO:K14277]
NECAME_01532  [KO:K12897]
NECAME_01594  [KO:K14277]
NECAME_01601  [KO:K14277]
NECAME_02009  [KO:K11984]
NECAME_02021  [KO:K12819]
NECAME_02103  [KO:K12622]
NECAME_02260  [KO:K06063]
NECAME_02486  [KO:K12897]
NECAME_02598  [KO:K12817]
NECAME_02955  [KO:K12845]
NECAME_03344  [KO:K12662]
NECAME_03468  [KO:K12868]
NECAME_03513  [KO:K12834]
NECAME_03782  [KO:K12867]
NECAME_03940  [KO:K11087]
NECAME_03941  [KO:K12893]
NECAME_04398  [KO:K12856]
NECAME_04760  [KO:K12624]
NECAME_04777  [KO:K12838]
NECAME_04788  [KO:K14277]
NECAME_04951  [KO:K14279]
NECAME_05449  [KO:K14277]
NECAME_05450  [KO:K14277]
NECAME_05481  [KO:K12870]
NECAME_05578  [KO:K12836]
NECAME_05621  [KO:K12892]
NECAME_06265  [KO:K14279]
NECAME_06421  [KO:K14280]
NECAME_06914  [KO:K12874]
NECAME_07185  [KO:K12621]
NECAME_07294  [KO:K12840]
NECAME_07406  [KO:K12812] [EC:5.6.2.7]
NECAME_08025  [KO:K12829]
NECAME_08028  [KO:K14280]
NECAME_08035  [KO:K11096]
NECAME_08047  [KO:K12818] [EC:5.6.2.6]
NECAME_08196  [KO:K12813] [EC:5.6.2.6]
NECAME_08227  [KO:K12886]
NECAME_08236  [KO:K13025] [EC:5.6.2.7]
NECAME_08281  [KO:K14280]
NECAME_08287  [KO:K12878]
NECAME_08448  [KO:K12857]
NECAME_08517  [KO:K12850]
NECAME_08611  [KO:K12816]
NECAME_08632  [KO:K14279]
NECAME_08633  [KO:K14279]
NECAME_08634  [KO:K14279]
NECAME_08636  [KO:K14279]
NECAME_08637  [KO:K14279]
NECAME_08638  [KO:K14279]
NECAME_08645  [KO:K14279]
NECAME_08646  [KO:K14279]
NECAME_08648  [KO:K14279]
NECAME_08649  [KO:K14279]
NECAME_08650  [KO:K14279]
NECAME_08651  [KO:K14279]
NECAME_08652  [KO:K14279]
NECAME_08937  [KO:K12859]
NECAME_09031  [KO:K12871]
NECAME_09094  [KO:K12881]
NECAME_09148  [KO:K14277]
NECAME_09151  [KO:K12890]
NECAME_09153  [KO:K12890]
NECAME_09154  [KO:K12890]
NECAME_09155  [KO:K12890]
NECAME_09156  [KO:K12890]
NECAME_09170  [KO:K12843]
NECAME_09225  [KO:K12741]
NECAME_09824  [KO:K12826]
NECAME_09923  [KO:K12830]
NECAME_10398  [KO:K12828]
NECAME_10430  [KO:K12827]
NECAME_10466  [KO:K14280]
NECAME_10511  [KO:K12833]
NECAME_10880  [KO:K14279]
NECAME_10881  [KO:K14279]
NECAME_11175  [KO:K12866]
NECAME_11568  [KO:K12839]
NECAME_11600  [KO:K12815] [EC:5.6.2.6]
NECAME_11629  [KO:K13025] [EC:5.6.2.7]
NECAME_11778  [KO:K12831]
NECAME_11882  [KO:K12852]
NECAME_11894  [KO:K12873]
NECAME_11897  [KO:K11092]
NECAME_12021  [KO:K12896]
NECAME_12460  [KO:K12864]
NECAME_12492  [KO:K12824]
NECAME_12528  [KO:K12881]
NECAME_12609  [KO:K12825]
NECAME_12718  [KO:K12821]
NECAME_12736  [KO:K12733] [EC:5.2.1.8]
NECAME_12824  [KO:K13098]
NECAME_13080  [KO:K11094]
NECAME_13278  [KO:K12822]
NECAME_13381  [KO:K11086]
NECAME_13522  [KO:K12837]
NECAME_13929  [KO:K11088]
NECAME_13945  [KO:K12847]
NECAME_14043  [KO:K12862]
NECAME_14190  [KO:K03283]
NECAME_14240  [KO:K14277]
NECAME_14816  [KO:K12860]
NECAME_14913  [KO:K12844]
NECAME_15135  [KO:K12858] [EC:5.6.2.7]
NECAME_15280  [KO:K12861]
NECAME_15338  [KO:K11093]
NECAME_15825  [KO:K11099]
NECAME_15946  [KO:K12880]
NECAME_15951  [KO:K12835] [EC:5.6.2.7]
NECAME_16974  [KO:K12626]
NECAME_17215  [KO:K12855]
NECAME_17461  [KO:K14279]
NECAME_17462  [KO:K14279]
NECAME_17463  [KO:K14279]
NECAME_17466  [KO:K14279]
NECAME_17467  [KO:K14279]
NECAME_17471  [KO:K14277]
NECAME_18306  [KO:K14279]
NECAME_18495  [KO:K14279]
NECAME_18658  [KO:K11094]
NECAME_18661  [KO:K14279]
NECAME_18697  [KO:K14280]
NECAME_18833  [KO:K14277]
NECAME_18845  [KO:K14279]
NECAME_18976  [KO:K14279]
NECAME_18988  [KO:K14279]
NECAME_19023  [KO:K14279]
NECAME_19458  [KO:K14277]
NECAME_19463  [KO:K14279]
NECAME_19471  [KO:K14277]
NECAME_19472  [KO:K14277]
NECAME_19492  [KO:K14279]
NECAME_19519  [KO:K14280]
NECAME_19571  [KO:K14279]
NECAME_19576  [KO:K14277]
NECAME_19577  [KO:K14280]
NECAME_19578  [KO:K14280]
NECAME_19594  [KO:K14279]
NECAME_19605  [KO:K14279]
NECAME_19608  [KO:K14279]
NECAME_19616  [KO:K14279]
NECAME_19619  [KO:K14279]
NECAME_19626  [KO:K14277]
NECAME_19629  [KO:K14279]
NECAME_19667  [KO:K14277]
NECAME_19678  [KO:K14279]
Reference
  Authors
Wahl MC, Will CL, Luhrmann R
  Title
The spliceosome: design principles of a dynamic RNP machine.
  Journal
Cell 136:701-18 (2009)
DOI:10.1016/j.cell.2009.02.009
Reference
  Authors
Morris DP, Greenleaf AL
  Title
The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.
  Journal
J Biol Chem 275:39935-43 (2000)
DOI:10.1074/jbc.M004118200
Reference
  Authors
Chen YI, Moore RE, Ge HY, Young MK, Lee TD, Stevens SW
  Title
Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.
  Journal
Nucleic Acids Res 35:3928-44 (2007)
DOI:10.1093/nar/gkm347
Reference
  Authors
Ritchie DB, Schellenberg MJ, MacMillan AM
  Title
Spliceosome structure: piece by piece.
  Journal
Biochim Biophys Acta 1789:624-33 (2009)
DOI:10.1016/j.bbagrm.2009.08.010
KO pathway
ko03040   

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