KEGG   PATHWAY: nss04622
Entry
nss04622                    Pathway                                
Name
RIG-I-like receptor signaling pathway - Notechis scutatus (mainland tiger snake)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
nss04622  RIG-I-like receptor signaling pathway
nss04622

Organism
Notechis scutatus (mainland tiger snake) [GN:nss]
Gene
113410076  NFKBIA; NF-kappa-B inhibitor alpha [KO:K04734]
113410230  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
113410258  FADD; FAS-associated death domain protein [KO:K02373]
113411493  MAP3K7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
113411517  ATG5; autophagy protein 5 [KO:K08339]
113412053  [KO:K10652] [EC:2.3.2.27]
113412281  TBK1; serine/threonine-protein kinase TBK1 isoform X1 [KO:K05410] [EC:2.7.11.10]
113412511  IRF7; interferon regulatory factor 7 isoform X1 [KO:K09447]
113413033  MAPK12; mitogen-activated protein kinase 12 isoform X1 [KO:K04441] [EC:2.7.11.24]
113413034  MAPK11; mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
113413424  IRF3; interferon regulatory factor 3 isoform X1 [KO:K05411]
113413499  TBKBP1; TANK-binding kinase 1-binding protein 1 [KO:K12652]
113413832  RNF125; E3 ubiquitin-protein ligase RNF125 [KO:K12170] [EC:2.3.2.27]
113413899  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
113414958  TRADD; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
113415036  DDX58; probable ATP-dependent RNA helicase DDX58 [KO:K12646] [EC:5.6.2.6]
113415345  NFKB1; nuclear factor NF-kappa-B p105 subunit [KO:K02580]
113415852  ATG12; ubiquitin-like protein ATG12 [KO:K08336]
113416137  PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 isoform X1 [KO:K09578] [EC:5.2.1.8]
113416274  DDX3X; ATP-dependent RNA helicase DDX3X isoform X1 [KO:K11594] [EC:5.6.2.7]
113416479  [KO:K12647] [EC:5.6.2.6]
113416503  TANK; TRAF family member-associated NF-kappa-B activator [KO:K12650]
113416534  [KO:K12647] [EC:5.6.2.6]
113416557  [KO:K12650]
113416977  SIKE1; suppressor of IKBKE 1 isoform X1 [KO:K12656]
113417471  CYLD; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
113417663  IKBKG; NF-kappa-B essential modulator isoform X1 [KO:K07210]
113417768  OTUD5; OTU domain-containing protein 5 isoform X1 [KO:K12655] [EC:3.4.19.12]
113417994  RIPK1; receptor-interacting serine/threonine-protein kinase 1 isoform X1 [KO:K02861] [EC:2.7.11.1]
113418781  [KO:K04441] [EC:2.7.11.24]
113418784  [KO:K04441] [EC:2.7.11.24]
113418976  [KO:K04441] [EC:2.7.11.24]
113418977  [KO:K04441] [EC:2.7.11.24]
113420044  [KO:K10030]
113420048  [KO:K10030]
113420338  TRAF3; TNF receptor-associated factor 3 isoform X1 [KO:K03174]
113420402  [KO:K05414]
113420752  TRIM25; E3 ubiquitin/ISG15 ligase TRIM25 isoform X1 [KO:K10652] [EC:2.3.2.27]
113421917  TKFC; triokinase/FMN cyclase [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
113422608  MAPK10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
113423754  [KO:K05425]
113424253  TRAF2; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
113424585  TNF; tumor necrosis factor [KO:K03156]
113424740  AZI2; 5-azacytidine-induced protein 2 [KO:K12651]
113424757  MAPK9; mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
113425188  CHUK; inhibitor of nuclear factor kappa-B kinase subunit alpha [KO:K04467] [EC:2.7.11.10]
113425497  [KO:K08601] [EC:3.4.19.12]
113425722  NLRX1; NLR family member X1 [KO:K12653]
113425764  ISG15; ubiquitin-like protein ISG15 [KO:K12159]
113425834  NFKBIB; NF-kappa-B inhibitor beta [KO:K02581]
113426188  MAPK8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
113427675  IKBKB; LOW QUALITY PROTEIN: inhibitor of nuclear factor kappa-B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
113428449  [KO:K08601] [EC:3.4.19.12]
113430413  [KO:K05414]
113430433  [KO:K05414]
113430434  [KO:K05414]
113430553  [KO:K05414]
113432856  DHX58; probable ATP-dependent RNA helicase DHX58 isoform X1 [KO:K12649] [EC:5.6.2.6]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
nss04010  MAPK signaling pathway
nss04120  Ubiquitin mediated proteolysis
nss04210  Apoptosis
KO pathway
ko04622   

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