KEGG   PATHWAY: afb03082
Entry
afb03082                    Pathway                                
Name
ATP-dependent chromatin remodeling - Anoplopoma fimbria (sablefish)
Class
Genetic Information Processing; Chromosome
Pathway map
afb03082  ATP-dependent chromatin remodeling
afb03082

Organism
Anoplopoma fimbria (sablefish) [GN:afb]
Gene
129095329  smarca5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [KO:K11654] [EC:5.6.2.-]
129103606  baz1a; LOW QUALITY PROTEIN: bromodomain adjacent to zinc finger domain protein 1A [KO:K11655]
129092256  baz1b; LOW QUALITY PROTEIN: tyrosine-protein kinase BAZ1B [KO:K11658]
129099492  baz2a; bromodomain adjacent to zinc finger domain protein 2A [KO:K15224]
129098484  baz2ba; bromodomain adjacent to zinc finger domain protein 2B isoform X1 [KO:K26167]
129104370  LOW QUALITY PROTEIN: bromodomain adjacent to zinc finger domain protein 2B [KO:K26167]
129097594  chrac1; chromatin accessibility complex protein 1 [KO:K11656]
129106653  pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
129089947  rsf1a; remodeling and spacing factor 1 isoform X1 [KO:K11657]
129113843  LOW QUALITY PROTEIN: remodeling and spacing factor 1-like [KO:K11657]
129095349  LOW QUALITY PROTEIN: nucleosome-remodeling factor subunit BPTF-like [KO:K11728]
129100156  histone-binding protein RBBP7 isoform X1 [KO:K10752]
129097070  rbbp4; histone-binding protein RBBP4 isoform X1 [KO:K10752]
129103353  histone-binding protein RBBP4 [KO:K10752]
129113306  c24h17orf49; chromatin complexes subunit BAP18 [KO:K23406]
129093706  zgc:92664; chromatin complexes subunit BAP18 isoform X1 [KO:K23406]
129108572  chromatin remodeling regulator CECR2 [KO:K25830]
129093186  chd3; LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 3 [KO:K11642] [EC:5.6.2.-]
129109492  chd4b; chromodomain-helicase-DNA-binding protein 4 isoform X1 [KO:K11643] [EC:5.6.2.-]
129096831  LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 4-like [KO:K11643] [EC:5.6.2.-]
129097059  probable histone deacetylase 1-B [KO:K06067] [EC:3.5.1.98]
129103215  probable histone deacetylase 1-B isoform X1 [KO:K06067] [EC:3.5.1.98]
129102535  mbd2; methyl-CpG-binding domain protein 2 isoform X1 [KO:K11590]
129094401  mbd3b; methyl-CpG-binding domain protein 3b isoform X1 [KO:K11591]
129088852  mbd3a; methyl-CpG-binding domain protein 3a [KO:K11591]
129091039  mta3; metastasis-associated protein MTA3 isoform X1 [KO:K11660]
129103403  mta1; metastasis-associated protein MTA1 [KO:K11660]
129093230  mta2; LOW QUALITY PROTEIN: metastasis-associated protein MTA2 [KO:K11660]
129089144  transcriptional repressor p66 alpha-like isoform X1 [KO:K23194]
129097252  gatad2b; transcriptional repressor p66-beta [KO:K23194]
129094250  gatad2ab; GATA zinc finger domain containing 2Ab [KO:K23194]
129090219  phf6; PHD finger protein 6 [KO:K23310]
129102378  cyclin-dependent kinase 2-associated protein 1 isoform X1 [KO:K26454]
129096027  cdk2ap2; cyclin-dependent kinase 2-associated protein 2 [KO:K26455]
129095529  LOW QUALITY PROTEIN: transcription activator BRG1 [KO:K11647] [EC:5.6.2.-]
129100800  smarca2; LOW QUALITY PROTEIN: probable global transcription activator SNF2L2 [KO:K11647] [EC:5.6.2.-]
129097900  smarca4a; LOW QUALITY PROTEIN: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a [KO:K11647] [EC:5.6.2.-]
129101151  smarcb1a; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A [KO:K11648]
129102045  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like [KO:K11648]
129105275  smarcc2; LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC2 [KO:K11649]
129097786  smarcc1b; SWI/SNF complex subunit SMARCC1b [KO:K11649]
129109212  smarcc1a; SWI/SNF complex subunit SMARCC1 isoform X1 [KO:K11649]
129105661  smarcd1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 [KO:K11650]
129110565  smarcd3b; LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3b [KO:K11650]
129091096  smarcd2; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 [KO:K11650]
129096062  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like isoform X1 [KO:K11651]
129098551  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like [KO:K11651]
129095232  actb1; actin, cytoplasmic 1 [KO:K05692]
129097901  actb2; actin, cytoplasmic 2 [KO:K05692]
129094494  actl6a; actin-like protein 6A [KO:K11340]
129094320  bcl7bb; B-cell CLL/lymphoma 7 protein family member B-B [KO:K25605]
129102594  bcl7a; B-cell CLL/lymphoma 7 protein family member A [KO:K25605]
129100253  calcium-responsive transactivator-like [KO:K15623]
129112822  ss18; protein SSXT isoform X1 [KO:K15623]
129110096  arid1aa; LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1A [KO:K11653]
129097061  LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1A-like [KO:K11653]
129107528  arid1b; LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1B [KO:K11653]
129103785  AT-rich interactive domain-containing protein 1B-like [KO:K11653]
129107214  dpf3; zinc finger protein DPF3 isoform X1 [KO:K22198]
129102993  dpf1; zinc finger protein neuro-d4 [KO:K22198]
129103507  zinc finger protein DPF3-like [KO:K22198]
129089955  zinc finger protein ubi-d4-like [KO:K13196]
129113173  zinc finger protein ubi-d4-like isoform X1 [KO:K13196]
129112535  arid2; AT-rich interactive domain-containing protein 2 isoform X1 [KO:K11765]
129106047  pbrm1l; polybromo 1, like isoform X1 [KO:K11757]
129106236  pbrm1; protein polybromo-1 isoform X1 [KO:K11757]
129099321  brd7; bromodomain-containing protein 7 isoform X1 [KO:K11723]
129101754  phf10; PHD finger protein 10 [KO:K22197]
129109670  brd9; bromodomain-containing protein 9 isoform X1 [KO:K22184]
129093202  bicra; BRD4-interacting chromatin-remodeling complex-associated protein isoform X1 [KO:K25612]
129091296  bicral; BRD4-interacting chromatin-remodeling complex-associated protein-like [KO:K25613]
129107238  ino80; chromatin-remodeling ATPase INO80 isoform X1 [KO:K11665] [EC:5.6.2.-]
129093908  ino80b; INO80 complex subunit B isoform X1 [KO:K11666]
129109984  ino80c; INO80 complex subunit C [KO:K11667]
129104157  INO80 complex subunit D isoform X1 [KO:K11668]
129109572  ino80e; INO80 complex subunit E isoform X1 [KO:K11669]
129109741  tfpt; TCF3 fusion partner [KO:K11670]
129113710  nfrkb; nuclear factor related to kappa-B-binding protein isoform X1 [KO:K11671]
129105896  mcrs1; microspherule protein 1 [KO:K11674]
129094454  uchl5; ubiquitin carboxyl-terminal hydrolase isozyme L5 [KO:K05610] [EC:3.4.19.12]
129105443  ruvbl1; ruvB-like 1 [KO:K04499] [EC:5.6.2.4]
129113680  ruvbl2; ruvB-like 2 [KO:K11338] [EC:5.6.2.3]
129099968  actr5; LOW QUALITY PROTEIN: actin-related protein 5 [KO:K11672]
129100080  actr8; actin-related protein 8 [KO:K11673]
129107350  yy1b; transcriptional repressor protein YY1b isoform X1 [KO:K09201]
129103432  yy1a; transcriptional repressor protein YY1a [KO:K09201]
129091672  srcap; LOW QUALITY PROTEIN: helicase SRCAP [KO:K11661] [EC:5.6.2.-]
129094651  dmap1; DNA methyltransferase 1-associated protein 1 [KO:K11324]
129112610  yeats4; YEATS domain-containing protein 4 [KO:K11341]
129097382  vps72a; vacuolar protein sorting 72 homolog a [KO:K11664]
129089422  late histone H2A.2.2-like [KO:K11251]
129100966  histone H2A.V [KO:K11251]
129112276  histone H2A-like [KO:K11251]
129112277  histone H2A-like [KO:K11251]
129112278  histone H2A-like [KO:K11251]
129112279  histone H2A-like [KO:K11251]
129113146  histone H2AX [KO:K11251]
129113222  core histone macro-H2A.1 isoform X1 [KO:K11251]
129113254  late histone H2A.L3 [KO:K11251]
129113255  late histone H2A.L3-like [KO:K11251]
129113257  late histone H2A.L3-like [KO:K11251]
129113350  histone H2A-like [KO:K11251]
129092061  core histone macro-H2A.2 isoform X1 [KO:K11251]
129114057  LOW QUALITY PROTEIN: histone H2A [KO:K11251]
129098018  late histone H2A.L3-like [KO:K11251]
129116120  histone H2A-like [KO:K11251]
129093090  histone H2A.Z [KO:K11251]
129108499  histone H2A [KO:K11251]
129108500  histone H2A [KO:K11251]
129108501  histone H2A [KO:K11251]
129108730  actr6; actin-related protein 6 [KO:K11662]
129093668  znhit1; zinc finger HIT domain-containing protein 1 [KO:K11663]
129100768  ep400; E1A-binding protein p400 isoform X1 [KO:K11320] [EC:5.6.2.-]
129090923  trrap; transformation/transcription domain-associated protein isoform X1 [KO:K08874]
129108334  morf4l1; mortality factor 4-like protein 1 isoform X1 [KO:K11339]
129108472  mortality factor 4-like protein 1 [KO:K11339]
129099616  mrgbp; MRG/MORF4L-binding protein [KO:K11343]
129089697  brd8b; bromodomain-containing protein 8 [KO:K11321]
129113877  brd8a; bromodomain-containing protein 8 [KO:K11321]
129112355  ing3; inhibitor of growth protein 3 [KO:K11319]
129104837  epc2; enhancer of polycomb homolog 2 [KO:K11322]
129089424  enhancer of polycomb homolog 1-like isoform X1 [KO:K11322]
129110779  LOW QUALITY PROTEIN: enhancer of polycomb homolog 1-like [KO:K11322]
129097528  meaf6; chromatin modification-related protein MEAF6 isoform X1 [KO:K11344]
129113356  histone acetyltransferase KAT5 [KO:K11304] [EC:2.3.1.48]
Reference
PMID:31769422
  Authors
Hasan N, Ahuja N
  Title
The Emerging Roles of ATP-Dependent Chromatin Remodeling Complexes in Pancreatic Cancer.
  Journal
Cancers (Basel) 11:cancers11121859 (2019)
DOI:10.3390/cancers11121859
Reference
PMID:32001526
  Authors
He S, Wu Z, Tian Y, Yu Z, Yu J, Wang X, Li J, Liu B, Xu Y
  Title
Structure of nucleosome-bound human BAF complex.
  Journal
Science 367:875-881 (2020)
DOI:10.1126/science.aaz9761
Reference
PMID:33941852
  Authors
Wanior M, Kramer A, Knapp S, Joerger AC
  Title
Exploiting vulnerabilities of SWI/SNF chromatin remodelling complexes for cancer therapy.
  Journal
Oncogene 40:3637-3654 (2021)
DOI:10.1038/s41388-021-01781-x
Reference
PMID:20493981
  Authors
Burgio G, Onorati MC, Corona DF
  Title
Chromatin remodeling regulation by small molecules and metabolites.
  Journal
Biochim Biophys Acta 1799:671-80 (2010)
DOI:10.1016/j.bbagrm.2010.05.007
KO pathway
ko03082   
LinkDB

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