KEGG PATHWAY: bfn00270

PATHWAY: bfn00270

Entry

bfn00270                    Pathway

Name

Cysteine and methionine metabolism - Paraburkholderia fungorum

Description

Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].

Class

Metabolism; Amino acid metabolism

Pathway map

bfn00270

Cysteine and methionine metabolism

Other DBs

GO:	0006534 0006555

Organism

Paraburkholderia fungorum [GN:bfn]

Gene

OI25_6311

bacterial transferase hexapeptide family protein [KO:K00640] [EC:2.3.1.30]

OI25_105

bacterial transferase hexapeptide family protein [KO:K00640] [EC:2.3.1.30]

OI25_2968

cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]

OI25_4552

hexapeptide repeat of succinyl-transferase family protein [KO:K00640] [EC:2.3.1.30]

OI25_3423

metC; cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]

OI25_1225

homocysteine S-methyltransferase family protein [KO:K00548] [EC:2.1.1.13]

OI25_1226

metH; methionine synthase [KO:K00548] [EC:2.1.1.13]

OI25_4708

metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase [KO:K00549] [EC:2.1.1.14]

OI25_4711

metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase [KO:K00549] [EC:2.1.1.14]

OI25_7550

mat; S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]

OI25_1344

metK; methionine adenosyltransferase [KO:K00789] [EC:2.5.1.6]

OI25_2021

spermine/spermidine synthase family protein [KO:K00797] [EC:2.5.1.16]

OI25_4666

spermine/spermidine synthase family protein [KO:K00797] [EC:2.5.1.16]

OI25_6299

lasI; acyl-homoserine-lactone synthase [KO:K13060] [EC:2.3.1.184]

OI25_2624

mtnN; MTA/SAH nucleosidase [KO:K01243] [EC:3.2.2.9]

OI25_3390

multi-copper polyphenol oxidoreductase laccase family protein [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]

OI25_3204

amidohydrolase family protein [KO:K12960] [EC:3.5.4.31 3.5.4.28]

OI25_377

aminotransferase class I and II family protein [KO:K00832] [EC:2.6.1.57]

OI25_6976

aminotransferase class I and II family protein [KO:K00832] [EC:2.6.1.57]

OI25_490

GAF domain protein [KO:K08968] [EC:1.8.4.14]

OI25_625

dcm; DNA (cytosine-5-)-methyltransferase family protein [KO:K00558] [EC:2.1.1.37]

OI25_1665

ahcY; adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]

OI25_6969

1-aminocyclopropane-1-carboxylate deaminase [KO:K01505] [EC:3.5.99.7]

OI25_2977

aspartate kinase, monofunctional class [KO:K00928] [EC:2.7.2.4]

OI25_5302

asd; aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]

OI25_3354

ACT domain protein [KO:K00003] [EC:1.1.1.3]

OI25_1360

metX; homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]

OI25_6086

alpha/beta hydrolase family protein [KO:K00641] [EC:2.3.1.31 2.3.1.46]

OI25_2642

O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein [KO:K01740] [EC:2.5.1.49]

OI25_5290

metZ; O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]

OI25_2138

ilvE; branched-chain amino acid aminotransferase [KO:K00826] [EC:2.6.1.42]

OI25_1175

gshA; glutamate--cysteine ligase [KO:K01919] [EC:6.3.2.2]

OI25_1488

gshA; glutamate--cysteine ligase [KO:K01919] [EC:6.3.2.2]

OI25_1174

gshB; glutathione synthase [KO:K01920] [EC:6.3.2.3]

OI25_5242

rhodanese-like domain protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]

OI25_910

aspD; aspartate 4-decarboxylase [KO:K09758] [EC:4.1.1.12]

OI25_2829

aspartate racemase family protein [KO:K25316] [EC:5.1.1.10]

OI25_5314

mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]

OI25_7902

mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]

OI25_4405

malate/L-lactate dehydrogenase family protein [KO:K16844] [EC:1.1.1.338]

OI25_4408

SAF domain protein [KO:K16845] [EC:4.4.1.24]

OI25_4407

hypothetical protein [KO:K16846] [EC:4.4.1.24]

OI25_8251

pyridoxal-phosphate dependent enzyme family protein [KO:K17950] [EC:4.4.1.25]

OI25_1561

L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]

OI25_4028

L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]

OI25_2427

cysM; cysteine synthase B [KO:K12339] [EC:2.5.1.144]

OI25_7456

cysM; cysteine synthase B [KO:K12339] [EC:2.5.1.144]

OI25_7345

D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K00058] [EC:1.1.1.95 1.1.1.399]

OI25_6062

D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K00058] [EC:1.1.1.95 1.1.1.399]

OI25_1394

D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K00058] [EC:1.1.1.95 1.1.1.399]

OI25_2412

serC; phosphoserine transaminase [KO:K00831] [EC:2.6.1.52]

Compound

C00019

S-Adenosyl-L-methionine

C00021

S-Adenosyl-L-homocysteine

C00022

Pyruvate

C00041

L-Alanine

C00049

L-Aspartate

C00051

Glutathione

C00059

Sulfate

C00065

L-Serine

C00073

L-Methionine

C00094

Sulfite

C00097

L-Cysteine

C00109

2-Oxobutanoate

C00155

L-Homocysteine

C00170

5'-Methylthioadenosine

C00197

3-Phospho-D-glycerate

C00263

L-Homoserine

C00283

Hydrogen sulfide

C00409

Methanethiol

C00441

L-Aspartate 4-semialdehyde

C00491

L-Cystine

C00506

L-Cysteate

C00606

3-Sulfino-L-alanine

C00793

D-Cysteine

C00957

Mercaptopyruvate

C00979

O-Acetyl-L-serine

C01005

O-Phospho-L-serine

C01077

O-Acetyl-L-homoserine

C01118

O-Succinyl-L-homoserine

C01137

S-Adenosylmethioninamine

C01180

4-Methylthio-2-oxobutanoic acid

C01234

1-Aminocyclopropane-1-carboxylate

C01817

L-Homocystine

C01962

Thiocysteine

C02218

Dehydroalanine

C02291

L-Cystathionine

C02356

(S)-2-Aminobutanoate

C02989

L-Methionine S-oxide

C03082

4-Phospho-L-aspartate

C03089

5-Methylthio-D-ribose

C03145

N-Formylmethionine

C03232

3-Phosphonooxypyruvate

C03431

S-Inosyl-L-homocysteine

C03539

S-Ribosyl-L-homocysteine

C04188

S-Methyl-5-thio-D-ribose 1-phosphate

C04582

S-Methyl-5-thio-D-ribulose 1-phosphate

C05324

Nicotianamine

C05524

Aminoacyl-L-methionine

C05526

S-Glutathionyl-L-cysteine

C05527

3-Sulfinylpyruvate

C05528

3-Sulfopyruvate

C05823

3-Mercaptolactate

C05824

S-Sulfo-L-cysteine

C06547

Ethylene

C08276

3-(Methylthio)propanoate

C09306

Sulfur dioxide

C11437

1-Deoxy-D-xylulose 5-phosphate

C11481

HSO3-

C11499

(S)-3-Sulfolactate

C11537

(2R)-3-Sulfolactate

C15606

1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one

C15650

2,3-Diketo-5-methylthiopentyl-1-phosphate

C15651

2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate

C18049

N-Acyl-L-homoserine lactone

C19787

5'-S-Methyl-5'-thioinosine

C21015

gamma-L-Glutamyl-L-2-aminobutyrate

C21016

Ophthalmate

C22359

S-Methyl-1-thio-D-xylulose 5-phosphate

Reference

PMID:15102328

Authors

Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A

Title

Bacterial variations on the methionine salvage pathway.

Journal

BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9

Reference

PMID:14551435

Authors

Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.

Title

A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.

Journal

Science 302:286-90 (2003)
DOI:10.1126/science.1086997

Reference

PMID:12022921

Authors

Sekowska A, Danchin A.

Title

The methionine salvage pathway in Bacillus subtilis.

Journal

BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8

Reference

PMID:12670965

Authors

Berger BJ, English S, Chan G, Knodel MH.

Title

Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.

Journal

J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003

Reference

PMID:17169919

Authors

Goyer A, Collakova E, Shachar-Hill Y, Hanson AD

Title

Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.

Journal

Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055

Reference

PMID:17030798

Authors

Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S

Title

Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.

Journal

Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103

Reference

PMID:18625006

Authors

Pirkov I, Norbeck J, Gustafsson L, Albers E

Title

A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.

Journal

FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x

Reference

PMID:18391471

Authors

Ashida H, Saito Y, Kojima C, Yokota A

Title

Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.

Journal

Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651

Reference

PMID:10613873

Authors

Kitabatake M, So MW, Tumbula DL, Soll D

Title

Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?

Journal

J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000

Reference

PMID:12644499

Authors

Mino K, Ishikawa K

Title

Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.

Journal

J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003

Reference

PMID:18520135

Authors

Tanabe S

Title

Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.

Journal

Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881

Reference

Authors

Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).

Title

[Cellular Functions and Metabolic Maps] (In Japanese)

Journal

Tokyo Kagaku Dojin (1997)

Reference

PMID:19270684

Authors