KEGG   PATHWAY: ebg00270
Entry
ebg00270                    Pathway                                
Name
Cysteine and methionine metabolism - Enterobacter bugandensis
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
ebg00270  Cysteine and methionine metabolism
ebg00270

Module
ebg_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:ebg00270]
ebg_M00021  Cysteine biosynthesis, serine => cysteine [PATH:ebg00270]
ebg_M00034  Methionine salvage pathway [PATH:ebg00270]
ebg_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:ebg00270]
Other DBs
GO: 0006534 0006555
Organism
Enterobacter bugandensis [GN:ebg]
Gene
FAI37_05965  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
FAI37_13020  cysK; cysteine synthase A [KO:K01738] [EC:2.5.1.47]
FAI37_01485  PLP-dependent cysteine synthase family protein [KO:K01738] [EC:2.5.1.47]
FAI37_19840  PLP-dependent transferase [KO:K01758] [EC:4.4.1.1]
FAI37_10290  metC; cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]
FAI37_19520  pyridoxal phosphate-dependent aminotransferase [KO:K14155] [EC:4.4.1.13]
FAI37_19835  pyridoxal-phosphate dependent enzyme [KO:K01697] [EC:4.2.1.22]
FAI37_01925  mmuM; homocysteine S-methyltransferase [KO:K00547] [EC:2.1.1.10]
FAI37_05390  metH; methionine synthase [KO:K00548] [EC:2.1.1.13]
FAI37_18710  methionine synthase [KO:K00549] [EC:2.1.1.14]
FAI37_07765  metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase [KO:K00549] [EC:2.1.1.14]
FAI37_10620  metK; methionine adenosyltransferase [KO:K00789] [EC:2.5.1.6]
FAI37_02815  speD; adenosylmethionine decarboxylase [KO:K01611] [EC:4.1.1.50]
FAI37_02810  speE; polyamine aminopropyltransferase [KO:K00797] [EC:2.5.1.16]
FAI37_02605  mtnN; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [KO:K01243] [EC:3.2.2.9]
FAI37_00645  S-methyl-5-thioribose kinase [KO:K00899] [EC:2.7.1.100]
FAI37_12240  pgeF; polyphenol oxidase [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
FAI37_17080  amidohydrolase [KO:K12960] [EC:3.5.4.31 3.5.4.28]
FAI37_00640  mtnA; S-methyl-5-thioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
FAI37_00620  methylthioribulose 1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]
FAI37_00625  mtnC; acireductone synthase [KO:K09880] [EC:3.1.3.77]
FAI37_00630  acireductone dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
FAI37_05030  aromatic amino acid transaminase [KO:K00832] [EC:2.6.1.57]
FAI37_15775  GAF domain-containing protein [KO:K08968] [EC:1.8.4.14]
FAI37_14990  DNA cytosine methyltransferase [KO:K00558] [EC:2.1.1.37]
FAI37_11715  luxS; S-ribosylhomocysteine lyase [KO:K07173] [EC:4.4.1.21]
FAI37_05355  lysC; lysine-sensitive aspartokinase 3 [KO:K00928] [EC:2.7.2.4]
FAI37_03315  thrA; bifunctional aspartate kinase/homoserine dehydrogenase I [KO:K12524] [EC:2.7.2.4 1.1.1.3]
FAI37_07350  bifunctional aspartate kinase/homoserine dehydrogenase II [KO:K12525] [EC:2.7.2.4 1.1.1.3]
FAI37_08280  asd; aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
FAI37_05420  metA; homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
FAI37_07345  metB; cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
FAI37_07505  ilvE; branched-chain-amino-acid transaminase [KO:K00826] [EC:2.6.1.42]
FAI37_11710  gshA; glutamate--cysteine ligase [KO:K01919] [EC:6.3.2.2]
FAI37_10595  gshB; glutathione synthase [KO:K01920] [EC:6.3.2.3]
FAI37_21875  aspartate/tyrosine/aromatic aminotransferase [KO:K00813] [EC:2.6.1.1]
FAI37_12555  sseA; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
FAI37_11010  aspartate/glutamate racemase [KO:K25316] [EC:5.1.1.10]
FAI37_15165  dcyD; D-cysteine desulfhydrase [KO:K05396] [EC:4.4.1.15]
FAI37_09115  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FAI37_11195  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
FAI37_15875  sdaA; L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
FAI37_12990  cysM; cysteine synthase CysM [KO:K12339] [EC:2.5.1.144]
FAI37_10785  serA; phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
FAI37_21975  serC; 3-phosphoserine/phosphohydroxythreonine transaminase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
ebg00010  Glycolysis / Gluconeogenesis
ebg00250  Alanine, aspartate and glutamate metabolism
ebg00260  Glycine, serine and threonine metabolism
ebg00290  Valine, leucine and isoleucine biosynthesis
ebg00430  Taurine and hypotaurine metabolism
ebg00480  Glutathione metabolism
ebg00620  Pyruvate metabolism
ebg00640  Propanoate metabolism
ebg00770  Pantothenate and CoA biosynthesis
ebg00900  Terpenoid backbone biosynthesis
ebg00920  Sulfur metabolism
KO pathway
ko00270   
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