KEGG   PATHWAY: gvr04146
Entry
gvr04146                    Pathway                                
Name
Peroxisome - Galeopterus variegatus (Sunda flying lemur)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
gvr04146  Peroxisome
gvr04146

Other DBs
GO: 0005777
Organism
Galeopterus variegatus (Sunda flying lemur) [GN:gvr]
Gene
103588720  PEX16; peroxisomal biogenesis factor 16 isoform X1 [KO:K13335]
103595455  PEX3; peroxisomal biogenesis factor 3 [KO:K13336]
103600423  PEX19; peroxisomal biogenesis factor 19 [KO:K13337]
103605331  ABCD3; ATP-binding cassette sub-family D member 3 [KO:K05677] [EC:7.6.2.4]
103590104  PEX1; peroxisome biogenesis factor 1 [KO:K13338]
103585756  PEX6; peroxisome biogenesis factor 6 [KO:K13339]
103594992  PEX26; peroxisome assembly protein 26 [KO:K13340]
103591892  PEX7; peroxisomal biogenesis factor 7 [KO:K13341]
103595769  PEX5; peroxisomal biogenesis factor 5 isoform X1 [KO:K13342]
103586773  PEX5L; PEX5-related protein [KO:K13342]
103587361  PEX14; peroxisomal membrane protein PEX14 isoform X1 [KO:K13343]
103588462  PEX13; peroxisome biogenesis factor 13 [KO:K13344]
103583429  peroxisomal membrane protein PEX13-like [KO:K13344]
103590389  PEX12; peroxisome assembly protein 12 [KO:K13345]
103594165  PEX10; peroxisome biogenesis factor 10 [KO:K13346]
103589500  PEX2; peroxisome biogenesis factor 2 [KO:K06664]
103585271  peroxisomal membrane protein 2 [KO:K13347]
103585290  peroxisomal membrane protein 2-like [KO:K13347]
103581797  MPV17L2; mpv17-like protein 2 [KO:K13348]
103600390  MPV17; protein Mpv17 isoform X1 [KO:K13348]
103586855  PXMP4; peroxisomal membrane protein 4 isoform X1 [KO:K13350]
103581099  PEX11A; peroxisomal membrane protein 11A [KO:K13351]
103590673  peroxisomal membrane protein 11A-like [KO:K13351]
103595866  PEX11B; peroxisomal membrane protein 11B [KO:K13352]
103596860  PEX11G; peroxisomal membrane protein 11C [KO:K13353]
103585661  SLC25A17; peroxisomal membrane protein PMP34 [KO:K13354]
103595212  HACL1; 2-hydroxyacyl-CoA lyase 1 isoform X1 [KO:K12261] [EC:4.1.2.63]
103600789  AMACR; alpha-methylacyl-CoA racemase [KO:K01796] [EC:5.1.99.4]
103582528  PHYH; phytanoyl-CoA dioxygenase, peroxisomal [KO:K00477] [EC:1.14.11.18]
103595262  ACOX3; peroxisomal acyl-coenzyme A oxidase 3 isoform X1 [KO:K00232] [EC:1.3.3.6]
103585191  ACOX1; peroxisomal acyl-coenzyme A oxidase 1 isoform X1 [KO:K00232] [EC:1.3.3.6]
103593550  ACOX2; peroxisomal acyl-coenzyme A oxidase 2 [KO:K10214] [EC:1.17.99.3]
103605910  HSD17B4; peroxisomal multifunctional enzyme type 2 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
103595947  SCP2; non-specific lipid-transfer protein isoform X1 [KO:K08764] [EC:2.3.1.176]
103607004  bile acid-CoA:amino acid N-acyltransferase-like [KO:K00659] [EC:2.3.1.65 3.1.2.2]
103591460  EHHADH; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
103602119  ACAA1; 3-ketoacyl-CoA thiolase, peroxisomal [KO:K07513] [EC:2.3.1.16]
103595719  DECR2; peroxisomal 2,4-dienoyl-CoA reductase [KO:K13237] [EC:1.3.1.124]
103591468  ECH1; delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [KO:K12663] [EC:5.3.3.21]
103602456  ABCD1; ATP-binding cassette sub-family D member 1 isoform X1 [KO:K05675] [EC:7.6.2.4]
103588490  ABCD2; ATP-binding cassette sub-family D member 2 isoform X1 [KO:K05676] [EC:7.6.2.4]
103586282  ABCD4; ATP-binding cassette sub-family D member 4 [KO:K05678] [EC:7.6.2.8]
103585831  SLC27A2; very long-chain acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
103609293  ACSL3; long-chain-fatty-acid--CoA ligase 3 isoform X1 [KO:K01897] [EC:6.2.1.3]
103590057  ACSL6; long-chain-fatty-acid--CoA ligase 6 isoform X1 [KO:K01897] [EC:6.2.1.3]
103585646  ACSL4; long-chain-fatty-acid--CoA ligase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
103605585  ACSL1; long-chain-fatty-acid--CoA ligase 1 isoform X1 [KO:K01897] [EC:6.2.1.3]
103587704  ACSL5; LOW QUALITY PROTEIN: long-chain-fatty-acid--CoA ligase 5 [KO:K01897] [EC:6.2.1.3]
103591829  PECR; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
103593454  ECI2; enoyl-CoA delta isomerase 2, mitochondrial [KO:K13239] [EC:5.3.3.8]
103588787  NUDT7; peroxisomal coenzyme A diphosphatase NUDT7 [KO:K17879] [EC:3.6.1.77]
103596451  NUDT12; peroxisomal NADH pyrophosphatase NUDT12 [KO:K03426] [EC:3.6.1.22]
103598202  NUDT13; nucleoside diphosphate-linked moiety X motif 13 isoform X1 [KO:K03426] [EC:3.6.1.22]
103589583  ACOT8; acyl-coenzyme A thioesterase 8 isoform X1 [KO:K11992] [EC:3.1.2.27]
103595987  CRAT; carnitine O-acetyltransferase isoform X1 [KO:K00624] [EC:2.3.1.7]
103604799  CROT; peroxisomal carnitine O-octanoyltransferase isoform X1 [KO:K05940] [EC:2.3.1.137]
103584374  MLYCD; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
103609958  GNPAT; dihydroxyacetone phosphate acyltransferase [KO:K00649] [EC:2.3.1.42]
103605233  alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
103591184  FAR2; fatty acyl-CoA reductase 2 [KO:K13356] [EC:1.2.1.84]
103599496  FAR1; fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
103599373  MVK; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
103611053  phosphomevalonate kinase isoform X1 [KO:K13273] [EC:2.7.4.2]
103608168  PMVK; phosphomevalonate kinase isoform X1 [KO:K13273] [EC:2.7.4.2]
103610508  serine--pyruvate aminotransferase, mitochondrial [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
103588169  DAO; D-amino-acid oxidase [KO:K00273] [EC:1.4.3.3]
103589524  DDO; D-aspartate oxidase [KO:K00272] [EC:1.4.3.1]
103582033  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
103604038  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
103583528  peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like [KO:K00308] [EC:1.5.3.13]
103606759  PAOX; peroxisomal N(1)-acetyl-spermine/spermidine oxidase [KO:K00308] [EC:1.5.3.13]
103585413  PIPOX; peroxisomal sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
103590738  HMGCL; hydroxymethylglutaryl-CoA lyase, mitochondrial isoform X1 [KO:K01640] [EC:4.1.3.4]
103598151  HMGCLL1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic isoform X1 [KO:K01640] [EC:4.1.3.4]
103588274  HAO2; hydroxyacid oxidase 2 [KO:K11517] [EC:1.1.3.15]
103601169  HAO1; hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
103581443  CAT; catalase [KO:K03781] [EC:1.11.1.6]
103586198  PRDX5; peroxiredoxin-5, mitochondrial [KO:K11187] [EC:1.11.1.24]
103585524  SOD1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
103601044  SOD2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
103604568  NOS2; LOW QUALITY PROTEIN: nitric oxide synthase, inducible [KO:K13241] [EC:1.14.13.39]
103592244  PRDX1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
103606837  EPHX2; bifunctional epoxide hydrolase 2 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
103600456  GSTK1; glutathione S-transferase kappa 1 isoform X1 [KO:K13299] [EC:2.5.1.18]
103607881  XDH; LOW QUALITY PROTEIN: xanthine dehydrogenase/oxidase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
103590174  dehydrogenase/reductase SDR family member 4-like isoform X1 [KO:K11147] [EC:1.1.-.-]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
gvr00071  Fatty acid degradation
gvr00120  Primary bile acid biosynthesis
gvr00230  Purine metabolism
gvr00564  Glycerophospholipid metabolism
gvr00565  Ether lipid metabolism
gvr00830  Retinol metabolism
gvr00900  Terpenoid backbone biosynthesis
gvr03320  PPAR signaling pathway
KO pathway
ko04146   
LinkDB

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