KEGG   PATHWAY: hro04140
Entry
hro04140                    Pathway                                
Name
Autophagy - animal - Helobdella robusta
Description
Autophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily conserved among eukaryotes and exquisitely regulated. This progress initiates with production of the autophagosome, a double-membrane intracellular structure of reticular origin that engulfs cytoplasmic contents and ultimately fuses with lysosomes for cargo degradation. Autophagy is regulated in response to extra- or intracellular stress and signals such as starvation, growth factor deprivation and ER stress. Constitutive level of autophagy plays an important role in cellular homeostasis and maintains quality control of essential cellular components.
Class
Cellular Processes; Transport and catabolism
Pathway map
hro04140  Autophagy - animal
hro04140

Other DBs
GO: 0006914
Organism
Helobdella robusta [GN:hro]
Gene
HELRODRAFT_171842  hypothetical protein [KO:K17445]
HELRODRAFT_96068  hypothetical protein [KO:K00922] [EC:2.7.1.153]
HELRODRAFT_155850  hypothetical protein [KO:K00922] [EC:2.7.1.153]
HELRODRAFT_137635  hypothetical protein [KO:K02649]
HELRODRAFT_76166  hypothetical protein [KO:K02649]
HELRODRAFT_136972  hypothetical protein [KO:K02649]
HELRODRAFT_63303  hypothetical protein [KO:K06276] [EC:2.7.11.1]
HELRODRAFT_189040  hypothetical protein [KO:K06276] [EC:2.7.11.1]
HELRODRAFT_119785  hypothetical protein [KO:K04456] [EC:2.7.11.1]
HELRODRAFT_120014  hypothetical protein [KO:K01110] [EC:3.1.3.16 3.1.3.48 3.1.3.67]
HELRODRAFT_151946  hypothetical protein [KO:K01110] [EC:3.1.3.16 3.1.3.48 3.1.3.67]
HELRODRAFT_90797  hypothetical protein [KO:K07827]
HELRODRAFT_156074  hypothetical protein [KO:K07830]
HELRODRAFT_155691  hypothetical protein [KO:K04368] [EC:2.7.12.2]
HELRODRAFT_185661  hypothetical protein [KO:K04371] [EC:2.7.11.24]
HELRODRAFT_161965  hypothetical protein [KO:K07203] [EC:2.7.11.1]
HELRODRAFT_106302  hypothetical protein [KO:K08266]
HELRODRAFT_193541  hypothetical protein [KO:K04688] [EC:2.7.11.1]
HELRODRAFT_84128  hypothetical protein [KO:K17606]
HELRODRAFT_98479  hypothetical protein [KO:K04382] [EC:3.1.3.16]
HELRODRAFT_66765  hypothetical protein [KO:K08269] [EC:2.7.11.1]
HELRODRAFT_74174  hypothetical protein [KO:K08269] [EC:2.7.11.1]
HELRODRAFT_157054  hypothetical protein [KO:K19730]
HELRODRAFT_101116  hypothetical protein [KO:K17906]
HELRODRAFT_192597  hypothetical protein [KO:K17906]
HELRODRAFT_185812  hypothetical protein [KO:K17908]
HELRODRAFT_189501  hypothetical protein [KO:K17908]
HELRODRAFT_185925  hypothetical protein [KO:K22991]
HELRODRAFT_185445  hypothetical protein [KO:K22991]
HELRODRAFT_95975  hypothetical protein [KO:K17907]
HELRODRAFT_161359  hypothetical protein [KO:K21245]
HELRODRAFT_66762  hypothetical protein [KO:K07901]
HELRODRAFT_83548  hypothetical protein [KO:K07901]
HELRODRAFT_75117  hypothetical protein [KO:K07901]
HELRODRAFT_135208  hypothetical protein [KO:K07925]
HELRODRAFT_83286  hypothetical protein [KO:K07925]
HELRODRAFT_185418  hypothetical protein [KO:K07925]
HELRODRAFT_174776  hypothetical protein [KO:K14381]
HELRODRAFT_191604  hypothetical protein [KO:K05410] [EC:2.7.11.10]
HELRODRAFT_193700  hypothetical protein [KO:K05410] [EC:2.7.11.10]
HELRODRAFT_185942  hypothetical protein [KO:K07874]
HELRODRAFT_185778  hypothetical protein [KO:K07874]
HELRODRAFT_78026  hypothetical protein [KO:K16185]
HELRODRAFT_164696  hypothetical protein [KO:K16186]
HELRODRAFT_70072  hypothetical protein [KO:K07298] [EC:2.7.11.1]
HELRODRAFT_94423  hypothetical protein [KO:K07298] [EC:2.7.11.1]
HELRODRAFT_155987  hypothetical protein [KO:K07198] [EC:2.7.11.31]
HELRODRAFT_112211  hypothetical protein [KO:K07198] [EC:2.7.11.31]
HELRODRAFT_82669  hypothetical protein [KO:K07198] [EC:2.7.11.31]
HELRODRAFT_67692  hypothetical protein [KO:K04345] [EC:2.7.11.11]
HELRODRAFT_88726  hypothetical protein [KO:K04345] [EC:2.7.11.11]
HELRODRAFT_110749  hypothetical protein [KO:K04345] [EC:2.7.11.11]
HELRODRAFT_156571  hypothetical protein [KO:K04345] [EC:2.7.11.11]
HELRODRAFT_169068  hypothetical protein [KO:K04345] [EC:2.7.11.11]
HELRODRAFT_187486  hypothetical protein [KO:K04345] [EC:2.7.11.11]
HELRODRAFT_65617  hypothetical protein [KO:K04345] [EC:2.7.11.11]
HELRODRAFT_94328  hypothetical protein [KO:K04345] [EC:2.7.11.11]
HELRODRAFT_158167  hypothetical protein [KO:K04345] [EC:2.7.11.11]
HELRODRAFT_98699  hypothetical protein [KO:K04345] [EC:2.7.11.11]
HELRODRAFT_67852  hypothetical protein [KO:K04345] [EC:2.7.11.11]
HELRODRAFT_70625  hypothetical protein [KO:K04345] [EC:2.7.11.11]
HELRODRAFT_89197  hypothetical protein [KO:K04440] [EC:2.7.11.24]
HELRODRAFT_185432  hypothetical protein [KO:K04570]
HELRODRAFT_78607  hypothetical protein [KO:K08334]
HELRODRAFT_187533  hypothetical protein [KO:K08333] [EC:2.7.11.1]
HELRODRAFT_113006  hypothetical protein [KO:K00914] [EC:2.7.1.137]
HELRODRAFT_184840  hypothetical protein [KO:K17889]
HELRODRAFT_194130  hypothetical protein [KO:K03175] [EC:2.3.2.27]
HELRODRAFT_185679  hypothetical protein [KO:K21248]
HELRODRAFT_191237  hypothetical protein [KO:K21249]
HELRODRAFT_79322  hypothetical protein [KO:K11248]
HELRODRAFT_64432  hypothetical protein [KO:K11248]
HELRODRAFT_67876  hypothetical protein [KO:K07359] [EC:2.7.11.17]
HELRODRAFT_69369  hypothetical protein [KO:K04427] [EC:2.7.11.25]
HELRODRAFT_116619  hypothetical protein [KO:K08852] [EC:2.7.11.1 3.1.26.-]
HELRODRAFT_162689  hypothetical protein [KO:K08803] [EC:2.7.11.1]
HELRODRAFT_157878  hypothetical protein [KO:K10802]
HELRODRAFT_171441  hypothetical protein [KO:K16196] [EC:2.7.11.1]
HELRODRAFT_114622  hypothetical protein [KO:K03237]
HELRODRAFT_62273  hypothetical protein [KO:K18082] [EC:3.1.3.48 3.1.3.64 3.1.3.95]
HELRODRAFT_190283  hypothetical protein [KO:K18086] [EC:3.1.3.64 3.1.3.95]
HELRODRAFT_108518  hypothetical protein [KO:K17603]
HELRODRAFT_68015  hypothetical protein [KO:K08336]
HELRODRAFT_65487  hypothetical protein [KO:K08339]
HELRODRAFT_99753  hypothetical protein [KO:K17890]
HELRODRAFT_105102  hypothetical protein [KO:K08337]
HELRODRAFT_185193  hypothetical protein [KO:K08343]
HELRODRAFT_143589  hypothetical protein [KO:K07920]
HELRODRAFT_77097  hypothetical protein [KO:K07920]
HELRODRAFT_71078  hypothetical protein [KO:K08341]
HELRODRAFT_93454  hypothetical protein [KO:K08341]
HELRODRAFT_62239  hypothetical protein [KO:K08341]
HELRODRAFT_69200  hypothetical protein [KO:K10435]
HELRODRAFT_105249  hypothetical protein [KO:K08342] [EC:3.4.22.-]
HELRODRAFT_190319  hypothetical protein [KO:K21347]
HELRODRAFT_194320  hypothetical protein [KO:K22262]
HELRODRAFT_194322  hypothetical protein [KO:K22262]
HELRODRAFT_115575  hypothetical protein [KO:K02977]
HELRODRAFT_193870  hypothetical protein [KO:K08770]
HELRODRAFT_184904  hypothetical protein [KO:K08509]
HELRODRAFT_185407  hypothetical protein [KO:K08516]
HELRODRAFT_100017  hypothetical protein [KO:K08516]
HELRODRAFT_192632  hypothetical protein [KO:K23883]
HELRODRAFT_102934  hypothetical protein [KO:K20179]
HELRODRAFT_106217  hypothetical protein [KO:K20180]
HELRODRAFT_109889  hypothetical protein [KO:K20181]
HELRODRAFT_86965  hypothetical protein [KO:K20182]
HELRODRAFT_165201  hypothetical protein [KO:K20183]
HELRODRAFT_189664  hypothetical protein [KO:K20183]
HELRODRAFT_105502  hypothetical protein [KO:K20184]
HELRODRAFT_78857  hypothetical protein [KO:K26797]
HELRODRAFT_185096  hypothetical protein [KO:K07897]
HELRODRAFT_161224  hypothetical protein [KO:K06528]
HELRODRAFT_95592  hypothetical protein [KO:K01379] [EC:3.4.23.5]
HELRODRAFT_185160  hypothetical protein [KO:K01365] [EC:3.4.22.15]
HELRODRAFT_164913  hypothetical protein [KO:K01365] [EC:3.4.22.15]
HELRODRAFT_189618  hypothetical protein [KO:K01365] [EC:3.4.22.15]
HELRODRAFT_96079  hypothetical protein [KO:K01365] [EC:3.4.22.15]
HELRODRAFT_164917  hypothetical protein [KO:K01365] [EC:3.4.22.15]
HELRODRAFT_185163  hypothetical protein [KO:K01365] [EC:3.4.22.15]
HELRODRAFT_185843  hypothetical protein [KO:K01365] [EC:3.4.22.15]
HELRODRAFT_186015  hypothetical protein [KO:K01363] [EC:3.4.22.1]
Compound
C00035  GDP
C00044  GTP
C00350  Phosphatidylethanolamine
C01194  1-Phosphatidyl-D-myo-inositol
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
C05981  Phosphatidylinositol-3,4,5-trisphosphate
Reference
  Authors
Meijer AJ, Codogno P.
  Title
Regulation and role of autophagy in mammalian cells.
  Journal
Int J Biochem Cell Biol 36:2445-62 (2004)
DOI:10.1016/j.biocel.2004.02.002
Reference
  Authors
Deretic V.
  Title
Autophagy in innate and adaptive immunity.
  Journal
Trends Immunol 26:523-8 (2005)
DOI:10.1016/j.it.2005.08.003
Reference
  Authors
Levine B, Yuan J.
  Title
Autophagy in cell death: an innocent convict?
  Journal
J Clin Invest 115:2679-88 (2005)
DOI:10.1172/JCI26390
Reference
  Authors
Tanida I, Ueno T, Kominami E.
  Title
LC3 conjugation system in mammalian autophagy.
  Journal
Int J Biochem Cell Biol 36:2503-18 (2004)
DOI:10.1016/j.biocel.2004.05.009
Reference
  Authors
Lum JJ, DeBerardinis RJ, Thompson CB.
  Title
Autophagy in metazoans: cell survival in the land of plenty.
  Journal
Nat Rev Mol Cell Biol 6:439-48 (2005)
DOI:10.1038/nrm1660
Reference
  Authors
Reggiori F, Klionsky DJ.
  Title
Autophagosomes: biogenesis from scratch?
  Journal
Curr Opin Cell Biol 17:415-22 (2005)
DOI:10.1016/j.ceb.2005.06.007
Reference
  Authors
Klionsky DJ, Emr SD.
  Title
Autophagy as a regulated pathway of cellular degradation.
  Journal
Science 290:1717-21 (2000)
DOI:10.1126/science.290.5497.1717
Reference
  Authors
Bechet D, Tassa A, Taillandier D, Combaret L, Attaix D.
  Title
Lysosomal proteolysis in skeletal muscle.
  Journal
Int J Biochem Cell Biol 37:2098-114 (2005)
DOI:10.1016/j.biocel.2005.02.029
Reference
  Authors
He C, Klionsky DJ
  Title
Regulation mechanisms and signaling pathways of autophagy.
  Journal
Annu Rev Genet 43:67-93 (2009)
DOI:10.1146/annurev-genet-102808-114910
Reference
  Authors
Yang Z, Klionsky DJ
  Title
An overview of the molecular mechanism of autophagy.
  Journal
Curr Top Microbiol Immunol 335:1-32 (2009)
DOI:10.1007/978-3-642-00302-8_1
Reference
  Authors
Yang Z, Klionsky DJ
  Title
Mammalian autophagy: core molecular machinery and signaling regulation.
  Journal
Curr Opin Cell Biol 22:124-31 (2010)
DOI:10.1016/j.ceb.2009.11.014
Reference
  Authors
Chen Y, Klionsky DJ
  Title
The regulation of autophagy - unanswered questions.
  Journal
J Cell Sci 124:161-70 (2011)
DOI:10.1242/jcs.064576
Reference
  Authors
Mizushima N, Yoshimori T, Ohsumi Y
  Title
The role of Atg proteins in autophagosome formation.
  Journal
Annu Rev Cell Dev Biol 27:107-32 (2011)
DOI:10.1146/annurev-cellbio-092910-154005
Reference
  Authors
Russell RC, Yuan HX, Guan KL
  Title
Autophagy regulation by nutrient signaling.
  Journal
Cell Res 24:42-57 (2014)
DOI:10.1038/cr.2013.166
Reference
  Authors
Noda NN, Fujioka Y
  Title
Atg1 family kinases in autophagy initiation.
  Journal
Cell Mol Life Sci 72:3083-96 (2015)
DOI:10.1007/s00018-015-1917-z
Related
pathway
hro04141  Protein processing in endoplasmic reticulum
hro04142  Lysosome
hro04150  mTOR signaling pathway
KO pathway
ko04140   
LinkDB

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