KEGG   PATHWAY: koc00270
Entry
koc00270                    Pathway                                
Name
Cysteine and methionine metabolism - Klebsiella oxytoca CAV1374
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
koc00270  Cysteine and methionine metabolism
koc00270

Module
koc_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:koc00270]
koc_M00021  Cysteine biosynthesis, serine => cysteine [PATH:koc00270]
koc_M00034  Methionine salvage pathway [PATH:koc00270]
koc_M00035  Methionine degradation [PATH:koc00270]
koc_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:koc00270]
Other DBs
GO: 0006534 0006555
Organism
Klebsiella oxytoca CAV1374 [GN:koc]
Gene
AB185_08070  cysE; serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
AB185_15255  cysteine synthase [KO:K01738] [EC:2.5.1.47]
AB185_29470  cysteine synthase [KO:K01738] [EC:2.5.1.47]
AB185_10990  cystathionine beta-lyase [KO:K01758] [EC:4.4.1.1]
AB185_19465  cystathionine beta-lyase [KO:K01758] [EC:4.4.1.1]
AB185_10910  cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]
AB185_19940  bifunctional beta-cystathionase/maltose regulon regulatory protein [KO:K14155] [EC:4.4.1.13]
AB185_10995  cystathionine beta-synthase [KO:K01697] [EC:4.2.1.22]
AB185_30025  homocysteine methyltransferase [KO:K00547] [EC:2.1.1.10]
AB185_05525  metH; B12-dependent methionine synthase [KO:K00548] [EC:2.1.1.13]
AB185_20460  5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
AB185_05995  5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
AB185_11410  S-adenosylmethionine synthetase [KO:K00789] [EC:2.5.1.6]
AB185_31335  S-adenosylmethionine decarboxylase [KO:K01611] [EC:4.1.1.50]
AB185_31330  spermidine synthase [KO:K00797] [EC:2.5.1.16]
AB185_31050  5'-methylthioadenosine nucleosidase [KO:K01243] [EC:3.2.2.9]
AB185_28160  methylthioribose kinase [KO:K00899] [EC:2.7.1.100]
AB185_14330  hypothetical protein [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
AB185_19210  hypothetical protein [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
AB185_28155  methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
AB185_28115  methylthioribulose-1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]
AB185_28065  haloacid dehalogenase [KO:K09880] [EC:3.1.3.77]
AB185_28070  acireductone dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
AB185_34520  aromatic amino acid aminotransferase [KO:K00832] [EC:2.6.1.57]
AB185_18110  Free methionine-R-sulfoxide reductase [KO:K08968] [EC:1.8.4.14]
AB185_04610  DNA cytosine methylase [KO:K00558] [EC:2.1.1.37]
AB185_17440  DNA cytosine methylase [KO:K00558] [EC:2.1.1.37]
AB185_17095  adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
AB185_13465  S-ribosylhomocysteinase [KO:K07173] [EC:4.4.1.21]
AB185_05405  aspartate kinase [KO:K00928] [EC:2.7.2.4]
AB185_32045  thrA; aspartate kinase [KO:K12524] [EC:2.7.2.4 1.1.1.3]
AB185_06490  metL; aspartate kinase [KO:K12525] [EC:2.7.2.4 1.1.1.3]
AB185_21440  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
AB185_09025  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
AB185_32040  serine kinase [KO:K00872] [EC:2.7.1.39]
AB185_05555  homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
AB185_06495  cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
AB185_06320  branched-chain amino acid aminotransferase [KO:K00826] [EC:2.6.1.42]
AB185_13460  glutamate--cysteine ligase [KO:K01919] [EC:6.3.2.2]
AB185_11385  glutathione synthetase [KO:K01920] [EC:6.3.2.3]
AB185_25735  aspartate aminotransferase [KO:K00812] [EC:2.6.1.1]
AB185_26360  aromatic amino acid aminotransferase [KO:K00813] [EC:2.6.1.1]
AB185_14650  sseA; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
AB185_20570  ldh; lactate dehydrogenase [KO:K00016] [EC:1.1.1.27]
AB185_12230  racemase [KO:K25316] [EC:5.1.1.10]
AB185_17505  cysteine desulfhydrase [KO:K05396] [EC:4.4.1.15]
AB185_09780  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AB185_12730  serine dehydratase [KO:K01752] [EC:4.3.1.17]
AB185_18210  serine dehydratase [KO:K01752] [EC:4.3.1.17]
AB185_22815  serine dehydratase [KO:K01752] [EC:4.3.1.17]
AB185_15205  cysM; cysteine synthase [KO:K12339] [EC:2.5.1.144]
AB185_28105  dihydrofolate reductase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
AB185_11600  D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
AB185_20920  oxidoreductase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
AB185_08715  hydroxyacid dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
AB185_26465  3-phosphoserine/phosphohydroxythreonine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01102  O-Phospho-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
koc00010  Glycolysis / Gluconeogenesis
koc00250  Alanine, aspartate and glutamate metabolism
koc00260  Glycine, serine and threonine metabolism
koc00290  Valine, leucine and isoleucine biosynthesis
koc00430  Taurine and hypotaurine metabolism
koc00480  Glutathione metabolism
koc00620  Pyruvate metabolism
koc00640  Propanoate metabolism
koc00770  Pantothenate and CoA biosynthesis
koc00900  Terpenoid backbone biosynthesis
koc00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

DBGET integrated database retrieval system