KEGG   PATHWAY: kpn00270
Entry
kpn00270                    Pathway                                
Name
Cysteine and methionine metabolism - Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (serotype K52)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
kpn00270  Cysteine and methionine metabolism
kpn00270

Module
kpn_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:kpn00270]
kpn_M00021  Cysteine biosynthesis, serine => cysteine [PATH:kpn00270]
kpn_M00034  Methionine salvage pathway [PATH:kpn00270]
kpn_M00035  Methionine degradation [PATH:kpn00270]
kpn_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:kpn00270]
Other DBs
GO: 0006534 0006555
Organism
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (serotype K52) [GN:kpn]
Gene
KPN_03951  cysE; serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
KPN_02761  cysK; cysteine synthase A, O-acetylserine sulfhydrolase A [KO:K01738] [EC:2.5.1.47]
KPN_00409  putative cysteine synthase/cystathionine beta-synthase [KO:K01738] [EC:2.5.1.47]
KPN_03410  metB; putative cystathionine gamma-synthase [KO:K01758] [EC:4.4.1.1]
KPN_03428  metC; cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]
KPN_01511  malY; bifunctional PLP-dependent beta-cystathionase; repressor of maltose regulon through interaction with MalT [KO:K14155] [EC:4.4.1.13]
KPN_03409  putative pyridoxal-5'-phosphate-dependent enzyme, beta subunit [KO:K01697] [EC:4.2.1.22]
KPN_00310  mmuM; homocysteine methyltransferase [KO:K00547] [EC:2.1.1.10]
KPN_04399  metH; B12-dependent methionine synthase [KO:K00548] [EC:2.1.1.13]
KPN_04325  metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
KPN_02152  putative 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
KPN_03375  metK; S-adenosylmethionine synthetase [KO:K00789] [EC:2.5.1.6]
KPN_00126  speD; S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
KPN_00127  speE; spermidine synthase [KO:K00797] [EC:2.5.1.16]
KPN_00174  pfs; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [KO:K01243] [EC:3.2.2.9]
KPN_00626  5-methylthioribose kinase [KO:K00899] [EC:2.7.1.100]
KPN_02916  r'rH; hypothetical protein [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
KPN_02115  hypothetical protein [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
KPN_00627  putative enzyme with methyltransferase domain [KO:K08963] [EC:5.3.1.23]
KPN_00634  putative aldolase [KO:K08964] [EC:4.2.1.109]
KPN_00644  phosphoglycolate phosphatase [KO:K09880] [EC:3.1.3.77]
KPN_00643  putative acireductone dioxygenase, ARD [KO:K08967] [EC:1.13.11.53 1.13.11.54]
KPN_04441  tyrB; aspartate aminotransferase [KO:K00832] [EC:2.6.1.57]
KPN_01365  aromatic-amino-acid aminotransferase [KO:K00832] [EC:2.6.1.57]
KPN_01361  putative aminotransferase [KO:K08969] [EC:2.6.1.117]
KPN_02348  yebR; hypothetical protein [KO:K08968] [EC:1.8.4.14]
KPN_02428  dcm; DNA cytosine methylase [KO:K00558] [EC:2.1.1.37]
KPN_04707  putative site-specific DNA methylas [KO:K00558] [EC:2.1.1.37]
KPN_01395  putative site-specific DNA methylase [KO:K00558] [EC:2.1.1.37]
KPN_02462  putative S-adenosylhomocysteine hydrolase [KO:K01251] [EC:3.13.2.1]
KPN_03018  ygaG; S-ribosylhomocysteinase [KO:K07173] [EC:4.4.1.21]
KPN_04412  lysC; aspartate kinase III [KO:K00928] [EC:2.7.2.4]
KPN_00002  thrA; bifunctional aspartokinase I/homeserine dehydrogenase I [KO:K12524] [EC:2.7.2.4 1.1.1.3]
KPN_04234  metL; bifunctional aspartate kinase II/homoserine dehydrogenase II [KO:K12525] [EC:2.7.2.4 1.1.1.3]
KPN_03799  asd; aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
KPN_01773  putative aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
KPN_04394  metA; homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
KPN_04233  metB; cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
KPN_04269  ilvE; branched-chain amino acid aminotransferase [KO:K00826] [EC:2.6.1.42]
KPN_03019  gshA; glutamate--cysteine ligase [KO:K01919] [EC:6.3.2.2]
KPN_03380  gshB; glutathione synthetase [KO:K01920] [EC:6.3.2.3]
KPN_00955  aspC; aspartate aminotransferase [KO:K00813] [EC:2.6.1.1]
KPN_02851  sseA; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
KPN_01632  putative malate dehydrogenase [KO:K00016] [EC:1.1.1.27]
KPN_03254  ygeA; putative aspartate racemase [KO:K25316] [EC:5.1.1.10]
KPN_02417  yedO; D-cysteine desulfhydrase [KO:K05396] [EC:4.4.1.15]
KPN_03644  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KPN_02330  sdaA; L-serine deaminase [KO:K01752] [EC:4.3.1.17]
KPN_03140  sdaB; L-serine deaminase 2 [KO:K01752] [EC:4.3.1.17]
KPN_02769  cysM; cysteine synthase B (O-acetylserine sulfhydrolase B) [KO:K12339] [EC:2.5.1.144]
KPN_03348  serA; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
KPN_00636  putative D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
KPN_00935  serC; phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
kpn00010  Glycolysis / Gluconeogenesis
kpn00250  Alanine, aspartate and glutamate metabolism
kpn00260  Glycine, serine and threonine metabolism
kpn00290  Valine, leucine and isoleucine biosynthesis
kpn00430  Taurine and hypotaurine metabolism
kpn00480  Glutathione metabolism
kpn00620  Pyruvate metabolism
kpn00640  Propanoate metabolism
kpn00770  Pantothenate and CoA biosynthesis
kpn00900  Terpenoid backbone biosynthesis
kpn00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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