KEGG   PATHWAY: ocu03008
Entry
ocu03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Oryctolagus cuniculus (rabbit)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
ocu03008  Ribosome biogenesis in eukaryotes
ocu03008

Organism
Oryctolagus cuniculus (rabbit) [GN:ocu]
Gene
100301531  CSNK2B; casein kinase II subunit beta [KO:K03115]
100301533  CSNK2A1; casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
100337973  casein kinase II subunit alpha' isoform X1 [KO:K03097] [EC:2.7.11.1]
100344701  nucleolar protein 6 [KO:K14544]
100355409  ribosomal RNA-processing protein 7 homolog A [KO:K14545]
100346179  WD repeat-containing protein 43 [KO:K14546]
100355535  U3 small nucleolar RNA-associated protein 4 homolog isoform X1 [KO:K14548]
100340349  U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
100349266  HEAT repeat-containing protein 1 [KO:K14550]
100355194  WD repeat-containing protein 75 [KO:K14552]
100339092  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
100351582  WD repeat-containing protein 36 [KO:K14554]
127486396  transducin beta-like protein 3 [KO:K14555]
100355708  WD repeat-containing protein 3 [KO:K14556]
100352606  U3 small nucleolar RNA-associated protein 6 homolog isoform X1 [KO:K14557]
127485848  periodic tryptophan protein 2 homolog [KO:K14558]
100343495  U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 [KO:K14559]
100342845  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
100358780  U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
100341764  treacle protein isoform X1 [KO:K14562]
100342094  rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
100356537  rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 [KO:K14563] [EC:2.1.1.-]
100352750  nucleolar protein 56 [KO:K14564]
100350995  nucleolar protein 58 isoform X1 [KO:K14565]
100351699  NHP2-like protein 1 isoform X1 [KO:K12845]
100359266  NHP2-like protein 1 [KO:K12845]
100340288  H/ACA ribonucleoprotein complex subunit DKC1 isoform X1 [KO:K11131] [EC:5.4.99.-]
100337799  H/ACA ribonucleoprotein complex subunit 2 isoform X2 [KO:K11129]
100351483  H/ACA ribonucleoprotein complex subunit 2-like [KO:K11129]
100358023  H/ACA ribonucleoprotein complex subunit 1 isoform X2 [KO:K11128]
100344594  H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
108178276  H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
100340275  rRNA-processing protein FCF1 homolog isoform X2 [KO:K14566]
100354790  rRNA-processing protein FCF1 homolog [KO:K14566]
100347274  U3 small nucleolar RNA-associated protein 14 homolog A [KO:K14567]
100349331  ribonuclease 3 isoform X1 [KO:K03685] [EC:3.1.26.3]
100342038  ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
100339194  ribosome biogenesis protein BMS1 homolog [KO:K14569]
100340636  RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
100347543  RNA 3'-terminal phosphate cyclase-like protein isoform X1 [KO:K11108]
100339220  ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
100351937  ribonuclease P protein subunit p38 [KO:K14523] [EC:3.1.26.5]
100343235  ribonuclease P protein subunit p38 [KO:K14523] [EC:3.1.26.5]
100351294  ribonuclease P protein subunit p29 isoform X1 [KO:K03538] [EC:3.1.26.5]
100351855  ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
127488125  ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
100343857  ribonuclease P protein subunit p25 [KO:K14525] [EC:3.1.26.5]
100342169  ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
100341086  ribonuclease P protein subunit p20 [KO:K14527] [EC:3.1.26.5]
100340340  ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
100351447  ribonuclease P protein subunit p40 [KO:K14530] [EC:3.1.26.5]
100351490  REXO5; RNA exonuclease 5 isoform X4 [KO:K14570] [EC:3.1.-.-]
103345755  RNA exonuclease 1 homolog isoform X1 [KO:K14570] [EC:3.1.-.-]
100338541  oligoribonuclease, mitochondrial isoform X3 [KO:K13288] [EC:3.1.-.-]
100351589  5'-3' exoribonuclease 1 isoform X3 [KO:K12618] [EC:3.1.13.-]
100353161  5'-3' exoribonuclease 2 isoform X1 [KO:K12619] [EC:3.1.13.-]
100343001  LOW QUALITY PROTEIN: GTP-binding protein 4 [KO:K06943]
100337853  GTP-binding protein 4 isoform X1 [KO:K06943]
100356168  LOW QUALITY PROTEIN: GTP-binding protein 4 [KO:K06943]
100354071  nucleolar GTP-binding protein 2 isoform X1 [KO:K14537]
100355139  ceramide synthase 2 [KO:K14537]
100343424  guanine nucleotide-binding protein-like 3-like protein isoform X1 [KO:K14538]
100348740  guanine nucleotide-binding protein-like 3 isoform X1 [KO:K14538]
100355144  nuclear valosin-containing protein-like isoform X1 [KO:K14571]
100350752  midasin isoform X2 [KO:K14572]
100338231  RNA-binding protein 28 [KO:K14573]
100342697  RNA-binding protein NOB1 isoform X1 [KO:K11883]
100352306  GTP-binding nuclear protein Ran [KO:K07936]
100357230  LOW QUALITY PROTEIN: GTP-binding nuclear protein Ran [KO:K07936]
100343451  exportin-1 isoform X2 [KO:K14290]
100354546  60S ribosomal export protein NMD3 isoform X1 [KO:K07562]
100347351  nuclear RNA export factor 1 isoform X1 [KO:K14284]
100342837  nuclear RNA export factor 2 [KO:K14284]
103351963  nuclear RNA export factor 2 isoform X1 [KO:K14284]
100340535  nuclear RNA export factor 2 isoform X2 [KO:K14284]
100339773  nuclear RNA export factor 2 isoform X1 [KO:K14284]
100338777  nuclear RNA export factor 3 [KO:K14284]
100339936  NTF2-related export protein 2 isoform X1 [KO:K14285]
100351903  NTF2-related export protein 1 [KO:K14285]
100344140  eukaryotic translation initiation factor 6 isoform X1 [KO:K03264]
100353886  ribosome maturation protein SBDS [KO:K14574]
127489678  LOW QUALITY PROTEIN: ribosome maturation protein SBDS-like [KO:K14574]
100354136  elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
100337744  large subunit GTPase 1 homolog isoform X1 [KO:K14539] [EC:3.6.1.-]
100344932  ribosome biogenesis protein SPATA5 isoform X3 [KO:K14575]
103349645  adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
100355082  adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
100354362  serine/threonine-protein kinase RIO1 [KO:K07178] [EC:2.7.11.1]
100347237  serine/threonine-protein kinase RIO2 isoform X2 [KO:K07179] [EC:2.7.11.1]
100328976  RN18S; 18S ribosomal RNA [KO:K01979]
127484575  small nucleolar RNA U3 [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
ocu03010  Ribosome
KO pathway
ko03008   
LinkDB

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