KEGG   PATHWAY: paj00270
Entry
paj00270                    Pathway                                
Name
Cysteine and methionine metabolism - Pantoea ananatis AJ13355
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
paj00270  Cysteine and methionine metabolism
paj00270

Module
paj_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:paj00270]
paj_M00021  Cysteine biosynthesis, serine => cysteine [PATH:paj00270]
paj_M00034  Methionine salvage pathway [PATH:paj00270]
Other DBs
GO: 0006534 0006555
Organism
Pantoea ananatis AJ13355 [GN:paj]
Gene
PAJ_3094  cysE; serine acetyltransferase CysE [KO:K00640] [EC:2.3.1.30]
PAJ_0331  cys11; cysteine synthase 1 Cys11 [KO:K01738] [EC:2.5.1.47]
PAJ_2047  cysK; cysteine synthase A CysK [KO:K01738] [EC:2.5.1.47]
PAJ_2597  metC; cystathionine beta-lyase MetC [KO:K01760] [EC:4.4.1.13]
PAJ_1529  patB; putative aminotransferase B PatB [KO:K14155] [EC:4.4.1.13]
PAJ_2259  mmuM; homocysteine S-methyltransferase MmuM [KO:K00547] [EC:2.1.1.10]
PAJ_3401  metH; methionine synthase MetH [KO:K00548] [EC:2.1.1.13]
PAJ_0967  metE; probable methylcobalamin:homocysteine methyltransferase MetE [KO:K00549] [EC:2.1.1.14]
PAJ_3346  metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE [KO:K00549] [EC:2.1.1.14]
PAJ_2437  metK; S-adenosylmethionine synthetase MetK [KO:K00789] [EC:2.5.1.6]
PAJ_0103  speD; S-adenosylmethionine decarboxylase proenzyme SpeD [KO:K01611] [EC:4.1.1.50]
PAJ_0104  speE; spermidine synthase SpeE [KO:K00797] [EC:2.5.1.16]
PAJ_0740  hypothetical protein [KO:K13061] [EC:2.3.1.184]
PAJ_1287  eanI; autoinducer synthesis protein EanI [KO:K22956] [EC:2.3.1.184]
PAJ_0130  mtnN; MTA/SAH nucleosidase MtnN [KO:K01243] [EC:3.2.2.9]
PAJ_0210  mtnK; methylthioribose kinase MtnK [KO:K00899] [EC:2.7.1.100]
PAJ_2287  yfiH; hypothetical UPF0124 protein YfiH [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
PAJ_2680  yfiH; hypothetical UPF0124 protein YfiH [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
PAJ_0209  putative translation initiation factor eIF-2B [KO:K08963] [EC:5.3.1.23]
PAJ_0206  sugar aldolasa [KO:K08964] [EC:4.2.1.109]
PAJ_0207  hypothetical protein [KO:K09880] [EC:3.1.3.77]
PAJ_0208  mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase MtnD [KO:K08967] [EC:1.13.11.53 1.13.11.54]
PAJ_3427  tyrB; aromatic-amino-acid aminotransferase TyrB [KO:K00832] [EC:2.6.1.57]
PAJ_0107  mdeA; methionine gamma-lyase MdeA [KO:K01761] [EC:4.4.1.11]
PAJ_1476  yebR; UPF0067 protein YebR [KO:K08968] [EC:1.8.4.14]
PAJ_1628  ecoRIIM; modification methylase EcoRII [KO:K00558] [EC:2.1.1.37]
PAJ_2302  luxS; S-ribosylhomocysteine lyase LuxS [KO:K07173] [EC:4.4.1.21]
PAJ_3407  lysC; lysine-sensitive aspartokinase III LysC [KO:K00928] [EC:2.7.2.4]
PAJ_0001  thrA; bifunctional aspartokinase/homoserine dehydrogenase I [KO:K12524] [EC:2.7.2.4 1.1.1.3]
PAJ_3066  metL; bifunctional aspartokinase/homoserine dehydrogenase II MetL [KO:K12525] [EC:2.7.2.4 1.1.1.3]
PAJ_2926  asd; aspartate-semialdehyde dehydrogenase Asd [KO:K00133] [EC:1.2.1.11]
PAJ_3392  metA; homoserine O-succinyltransferase MetA [KO:K00651] [EC:2.3.1.46 2.3.1.31]
PAJ_3067  metB; cystathionine gamma-synthase MetB [KO:K01739] [EC:2.5.1.48]
PAJ_3045  ilvE; branched-chain-amino-acid aminotransferase IlvE [KO:K00826] [EC:2.6.1.42]
PAJ_2303  gshA; glutamate-cysteine ligase GshA [KO:K01919] [EC:6.3.2.2]
PAJ_2444  gshB; glutathione synthetase GshB [KO:K01920] [EC:6.3.2.3]
PAJ_0692  aspC; aspartate aminotransferase AspC [KO:K00813] [EC:2.6.1.1]
PAJ_2152  sseA; 3-mercaptopyruvate sulfurtransferase SseA [KO:K01011] [EC:2.8.1.1 2.8.1.2]
PAJ_p0209  ygeA; aspartate racemase YgeA [KO:K25316] [EC:5.1.1.10]
PAJ_1574  dcyD; D-cysteine desulfhydrase DcyD [KO:K05396] [EC:4.4.1.15]
PAJ_2775  mdh; malate dehydrogenase Mdh [KO:K00024] [EC:1.1.1.37]
PAJ_1461  sdaA; L-serine dehydratase 1 SdaA [KO:K01752] [EC:4.3.1.17]
PAJ_2053  cysM; cysteine synthase B CysM [KO:K12339] [EC:2.5.1.144]
PAJ_0961  gyaR; Glyoxylate reductase GyaR [KO:K00058] [EC:1.1.1.95 1.1.1.399]
PAJ_2224  serA; D-3-phosphoglycerate dehydrogenase SerA [KO:K00058] [EC:1.1.1.95 1.1.1.399]
PAJ_2239  hypothetical protein [KO:K00058] [EC:1.1.1.95 1.1.1.399]
PAJ_2424  serA; D-3-phosphoglycerate dehydrogenase SerA [KO:K00058] [EC:1.1.1.95 1.1.1.399]
PAJ_0673  serC; phosphoserine aminotransferase SerC [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
paj00010  Glycolysis / Gluconeogenesis
paj00250  Alanine, aspartate and glutamate metabolism
paj00260  Glycine, serine and threonine metabolism
paj00290  Valine, leucine and isoleucine biosynthesis
paj00430  Taurine and hypotaurine metabolism
paj00480  Glutathione metabolism
paj00620  Pyruvate metabolism
paj00640  Propanoate metabolism
paj00770  Pantothenate and CoA biosynthesis
paj00900  Terpenoid backbone biosynthesis
paj00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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