KEGG   PATHWAY: pvu00900
Entry
pvu00900                    Pathway                                
Name
Terpenoid backbone biosynthesis - Phaseolus vulgaris (common bean)
Description
Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.
Class
Metabolism; Metabolism of terpenoids and polyketides
Pathway map
pvu00900  Terpenoid backbone biosynthesis
pvu00900

Module
pvu_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:pvu00900]
pvu_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:pvu00900]
pvu_M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:pvu00900]
Other DBs
GO: 0009240 0016091
Organism
Phaseolus vulgaris (common bean) [GN:pvu]
Gene
PHAVU_003G099600g  hypothetical protein [KO:K01662] [EC:2.2.1.7]
PHAVU_006G159900g  hypothetical protein [KO:K01662] [EC:2.2.1.7]
PHAVU_003G148900g  hypothetical protein [KO:K01662] [EC:2.2.1.7]
PHAVU_003G287800g  hypothetical protein [KO:K01662] [EC:2.2.1.7]
PHAVU_003G287900g  hypothetical protein [KO:K01662] [EC:2.2.1.7]
PHAVU_009G095900g  hypothetical protein [KO:K01662] [EC:2.2.1.7]
PHAVU_010G023000g  hypothetical protein [KO:K00099] [EC:1.1.1.267]
PHAVU_003G200300g  hypothetical protein [KO:K00099] [EC:1.1.1.267]
PHAVU_003G0909000  hypothetical protein [KO:K00991] [EC:2.7.7.60]
PHAVU_006G019500g  hypothetical protein [KO:K00919] [EC:2.7.1.148]
PHAVU_002G159900g  hypothetical protein [KO:K01770] [EC:4.6.1.12]
PHAVU_005G135800g  hypothetical protein [KO:K03526] [EC:1.17.7.1 1.17.7.3]
PHAVU_011G047900g  hypothetical protein [KO:K03527] [EC:1.17.7.4]
PHAVU_003G087600g  hypothetical protein [KO:K00626] [EC:2.3.1.9]
PHAVU_008G288400g  hypothetical protein [KO:K00626] [EC:2.3.1.9]
PHAVU_003G213200g  hypothetical protein [KO:K01641] [EC:2.3.3.10]
PHAVU_002G153600g  hypothetical protein [KO:K01641] [EC:2.3.3.10]
PHAVU_004G123000g  hypothetical protein [KO:K01641] [EC:2.3.3.10]
PHAVU_002G118900g  hypothetical protein [KO:K00021] [EC:1.1.1.34]
PHAVU_008G208900g  hypothetical protein [KO:K00021] [EC:1.1.1.34]
PHAVU_003G271800g  hypothetical protein [KO:K00021] [EC:1.1.1.34]
PHAVU_006G008200g  hypothetical protein [KO:K00021] [EC:1.1.1.34]
PHAVU_006G092900g  hypothetical protein [KO:K00869] [EC:2.7.1.36]
PHAVU_009G0553001  hypothetical protein [KO:K00938] [EC:2.7.4.2]
PHAVU_007G021200g  hypothetical protein [KO:K01597] [EC:4.1.1.33]
PHAVU_002G091000g  hypothetical protein [KO:K06981] [EC:2.7.4.26]
PHAVU_L002800g  hypothetical protein [KO:K01823] [EC:5.3.3.2]
PHAVU_006G136300g  hypothetical protein [KO:K00787] [EC:2.5.1.1 2.5.1.10]
PHAVU_003G239100g  hypothetical protein [KO:K14066] [EC:2.5.1.1]
PHAVU_002G181400g  hypothetical protein [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
PHAVU_001G139700g  hypothetical protein [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
PHAVU_003G251500g  hypothetical protein [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
PHAVU_008G268100g  hypothetical protein [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
PHAVU_008G268200g  hypothetical protein [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
PHAVU_002G026400g  hypothetical protein [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
PHAVU_005G064200g  hypothetical protein [KO:K05356] [EC:2.5.1.84 2.5.1.85]
PHAVU_002G041200g  hypothetical protein [KO:K11778] [EC:2.5.1.87]
PHAVU_003G269600g  hypothetical protein [KO:K11778] [EC:2.5.1.87]
PHAVU_008G261800g  hypothetical protein [KO:K11778] [EC:2.5.1.87]
PHAVU_008G208000g  hypothetical protein [KO:K10960] [EC:1.3.1.83 1.3.1.111]
PHAVU_003G189600g  hypothetical protein [KO:K10960] [EC:1.3.1.83 1.3.1.111]
PHAVU_011G107200g  hypothetical protein [KO:K12742] [EC:4.2.3.27]
PHAVU_011G1068000  hypothetical protein [KO:K12742] [EC:4.2.3.27]
PHAVU_011G107100g  hypothetical protein [KO:K12742] [EC:4.2.3.27]
PHAVU_005G133100g  hypothetical protein [KO:K12742] [EC:4.2.3.27]
PHAVU_005G133200g  hypothetical protein [KO:K12742] [EC:4.2.3.27]
PHAVU_005G133300g  hypothetical protein [KO:K12742] [EC:4.2.3.27]
PHAVU_005G135000g  hypothetical protein [KO:K12742] [EC:4.2.3.27]
PHAVU_005G135100g  hypothetical protein [KO:K12742] [EC:4.2.3.27]
PHAVU_005G135200g  hypothetical protein [KO:K12742] [EC:4.2.3.27]
PHAVU_005G152400g  hypothetical protein [KO:K05955] [EC:2.5.1.58 2.5.1.59]
PHAVU_004G014500g  hypothetical protein [KO:K05954] [EC:2.5.1.58]
PHAVU_007G229100g  hypothetical protein [KO:K08658] [EC:3.4.26.1]
PHAVU_008G059300g  hypothetical protein [KO:K06013] [EC:3.4.24.84]
PHAVU_004G144800g  hypothetical protein [KO:K00587] [EC:2.1.1.100]
PHAVU_003G282000g  hypothetical protein [KO:K15889] [EC:3.1.1.-]
PHAVU_002G197000g  hypothetical protein [KO:K15889] [EC:3.1.1.-]
PHAVU_009G154600g  hypothetical protein [KO:K05906] [EC:1.8.3.5 1.8.3.6]
PHAVU_009G064000g  hypothetical protein [KO:K15891] [EC:1.1.1.354]
PHAVU_006G071000g  hypothetical protein [KO:K15892] [EC:2.7.1.216]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00118  D-Glyceraldehyde 3-phosphate
C00129  Isopentenyl diphosphate
C00235  Dimethylallyl diphosphate
C00332  Acetoacetyl-CoA
C00341  Geranyl diphosphate
C00353  Geranylgeranyl diphosphate
C00356  (S)-3-Hydroxy-3-methylglutaryl-CoA
C00418  (R)-Mevalonate
C00448  trans,trans-Farnesyl diphosphate
C01107  (R)-5-Phosphomevalonate
C01126  (2E,6E)-Farnesol
C01143  (R)-5-Diphosphomevalonate
C01230  all-trans-Hexaprenyl diphosphate
C02321  cis-1,4-Polyisoprene
C03461  2-trans,6-trans-Farnesal
C04145  all-trans-Nonaprenyl diphosphate
C04146  all-trans-Octaprenyl diphosphate
C04216  all-trans-Heptaprenyl diphosphate
C04506  Protein C-terminal S-farnesyl-L-cysteine
C04574  di-trans,poly-cis-Undecaprenyl diphosphate
C04748  Protein C-terminal S-farnesyl-L-cysteine methyl ester
C05427  Phytyl diphosphate
C05859  ditrans,polycis-Polyprenyl diphosphate
C06081  Polyprenol
C11434  2-C-Methyl-D-erythritol 4-phosphate
C11435  4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11436  2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11437  1-Deoxy-D-xylulose 5-phosphate
C11453  2-C-Methyl-D-erythritol 2,4-cyclodiphosphate
C11811  1-Hydroxy-2-methyl-2-butenyl 4-diphosphate
C16521  Isoprene
C16826  2-cis,6-trans-Farnesyl diphosphate
C17432  all-trans-Decaprenyl diphosphate
C18321  trans,octacis-Decaprenyl diphosphate
C19691  Farnesylcysteine
C19760  2-cis,6-cis-Farnesyl diphosphate
C19852  tritrans,heptacis-Undecaprenyl diphosphate
C19853  trans,polycis-Polyprenyl diphosphate
C20120  S-Farnesyl protein
C20121  trans,trans-Farnesyl phosphate
C20345  Isopentenyl phosphate
C20847  (R)-Mevalonate 3-phosphate
C20848  (R)-Mevalonate 3,5-bisphosphate
C22453  trans-Anhydromevalonate 5-phosphate
Reference
  Authors
Lange BM, Ghassemian M.
  Title
Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
  Journal
Plant Mol Biol 51:925-48 (2003)
DOI:10.1023/A:1023005504702
Reference
  Authors
Saiki R, Nagata A, Kainou T, Matsuda H, Kawamukai M
  Title
Characterization of solanesyl and decaprenyl diphosphate synthases in mice and humans.
  Journal
FEBS J 272:5606-22 (2005)
DOI:10.1111/j.1742-4658.2005.04956.x
Reference
PMID:9858571
  Authors
Sato M, Sato K, Nishikawa S, Hirata A, Kato J, Nakano A
  Title
The yeast RER2 gene, identified by endoplasmic reticulum protein localization mutations, encodes cis-prenyltransferase, a key enzyme in dolichol synthesis.
  Journal
Mol Cell Biol 19:471-83 (1999)
DOI:10.1128/MCB.19.1.471
Reference
  Authors
Vannice JC, Skaff DA, Keightley A, Addo JK, Wyckoff GJ, Miziorko HM
  Title
Identification in Haloferax volcanii of phosphomevalonate decarboxylase and isopentenyl phosphate kinase as catalysts of the terminal enzyme reactions in an  archaeal alternate mevalonate pathway.
  Journal
J Bacteriol 196:1055-63 (2014)
DOI:10.1128/JB.01230-13
Related
pathway
pvu00010  Glycolysis / Gluconeogenesis
pvu00100  Steroid biosynthesis
pvu00130  Ubiquinone and other terpenoid-quinone biosynthesis
pvu00270  Cysteine and methionine metabolism
pvu00510  N-Glycan biosynthesis
pvu00902  Monoterpenoid biosynthesis
pvu00904  Diterpenoid biosynthesis
pvu00906  Carotenoid biosynthesis
pvu00908  Zeatin biosynthesis
pvu00909  Sesquiterpenoid and triterpenoid biosynthesis
KO pathway
ko00900   
LinkDB

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