KEGG   PATHWAY: rkg00270
Entry
rkg00270                    Pathway                                
Name
Cysteine and methionine metabolism - Rhinichthys klamathensis goyatoka (western speckled dace)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
rkg00270  Cysteine and methionine metabolism
rkg00270

Module
rkg_M00035  Methionine degradation [PATH:rkg00270]
rkg_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:rkg00270]
Other DBs
GO: 0006534 0006555
Organism
Rhinichthys klamathensis goyatoka (western speckled dace) [GN:rkg]
Gene
130087592  cth; cystathionine gamma-lyase [KO:K01758] [EC:4.4.1.1]
130087593  cystathionine gamma-lyase-like [KO:K01758] [EC:4.4.1.1]
130078299  kyat1; kynurenine--oxoglutarate transaminase 1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
130081262  kynurenine--oxoglutarate transaminase 3 isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
130085850  cbsb; cystathionine beta-synthase b [KO:K01697] [EC:4.2.1.22]
130087817  cbsa; cystathionine beta-synthase a [KO:K01697] [EC:4.2.1.22]
130088056  bhmt; betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
130081330  zgc:172121; homocysteine S-methyltransferase YbgG isoform X1 [KO:K00547] [EC:2.1.1.10]
130069720  mtr; methionine synthase isoform X1 [KO:K00548] [EC:2.1.1.13]
130083082  mat1a; S-adenosylmethionine synthase isoform X1 [KO:K00789] [EC:2.5.1.6]
130069096  mat2ab; S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
130095368  mat2b; methionine adenosyltransferase 2 subunit beta isoform X1 [KO:K00789] [EC:2.5.1.6]
130087119  mat2aa; methionine adenosyltransferase II, alpha a isoform X1 [KO:K00789] [EC:2.5.1.6]
130071184  mat2al; methionine adenosyltransferase II, alpha-like isoform X1 [KO:K00789] [EC:2.5.1.6]
130090009  amd1; S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
130073883  srm; spermidine synthase [KO:K00797] [EC:2.5.1.16]
130072143  sms; spermine synthase [KO:K00802] [EC:2.5.1.22]
130099427  mtap; S-methyl-5'-thioadenosine phosphorylase [KO:K00772] [EC:2.4.2.28]
130075817  lacc1; purine nucleoside phosphorylase LACC1 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
130091244  apip; methylthioribulose-1-phosphate dehydratase isoform X1 [KO:K08964] [EC:4.2.1.109]
130071177  enoph1; enolase-phosphatase E1 [KO:K09880] [EC:3.1.3.77]
130088869  adi1; acireductone dioxygenase isoform X1 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
130094827  tat; tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
130096810  il4i1; L-amino-acid oxidase [KO:K03334] [EC:1.4.3.2]
130088929  gnmt; glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
130086564  dnmt1; DNA (cytosine-5)-methyltransferase 1 isoform X1 [KO:K00558] [EC:2.1.1.37]
130103157  dnmt3aa; DNA (cytosine-5-)-methyltransferase 3 alpha a isoform X1 [KO:K17398] [EC:2.1.1.37]
130080266  dnmt3ab; DNA (cytosine-5)-methyltransferase 3A isoform X1 [KO:K17398] [EC:2.1.1.37]
130094657  dnmt3ba; DNA (cytosine-5-)-methyltransferase 3 beta, duplicate a isoform X1 [KO:K17399] [EC:2.1.1.37]
130094611  ahcyl1; S-adenosylhomocysteine hydrolase-like protein 1 isoform X1 [KO:K01251] [EC:3.13.2.1]
130104075  ahcy; adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
130104453  ahcyl2a; adenosylhomocysteinase like 2a isoform X1 [KO:K01251] [EC:3.13.2.1]
130069576  ahcyl2b; adenosylhomocysteinase like 2b [KO:K01251] [EC:3.13.2.1]
130078614  bcat2; branched-chain-amino-acid aminotransferase, mitochondrial [KO:K00826] [EC:2.6.1.42]
130072293  bcat1; branched-chain-amino-acid aminotransferase, cytosolic isoform X1 [KO:K00826] [EC:2.6.1.42]
130090775  agxt2; alanine--glyoxylate aminotransferase 2, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
130092321  gclc; glutamate--cysteine ligase catalytic subunit [KO:K11204] [EC:6.3.2.2]
130091628  gclm; glutamate--cysteine ligase regulatory subunit [KO:K11205]
130070789  gss; glutathione synthetase [KO:K21456] [EC:6.3.2.3]
130072948  cysteine dioxygenase type 1-like [KO:K00456] [EC:1.13.11.20]
130072965  cysteine dioxygenase type 1 [KO:K00456] [EC:1.13.11.20]
130106372  got1; aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
130081943  got1l1; putative aspartate aminotransferase, cytoplasmic 2 [KO:K14454] [EC:2.6.1.1]
130091202  got2b; LOW QUALITY PROTEIN: glutamic-oxaloacetic transaminase 2b, mitochondrial [KO:K14455] [EC:2.6.1.1]
130088310  got2a; aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
130075978  mpst; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
130086011  ldha; L-lactate dehydrogenase A chain [KO:K00016] [EC:1.1.1.27]
130106425  ldhbb; L-lactate dehydrogenase B-B chain isoform X1 [KO:K00016] [EC:1.1.1.27]
130071133  ldhba; L-lactate dehydrogenase B-A chain [KO:K00016] [EC:1.1.1.27]
130087327  mdh1aa; malate dehydrogenase 1Aa, NAD (soluble) isoform X1 [KO:K00025] [EC:1.1.1.37]
130097462  mdh1ab; malate dehydrogenase 1Ab, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
130105507  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
130101498  sdsl; serine dehydratase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
130105463  phgdh; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
130069110  psat1; phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
rkg00010  Glycolysis / Gluconeogenesis
rkg00250  Alanine, aspartate and glutamate metabolism
rkg00260  Glycine, serine and threonine metabolism
rkg00290  Valine, leucine and isoleucine biosynthesis
rkg00430  Taurine and hypotaurine metabolism
rkg00480  Glutathione metabolism
rkg00620  Pyruvate metabolism
rkg00640  Propanoate metabolism
rkg00770  Pantothenate and CoA biosynthesis
rkg00900  Terpenoid backbone biosynthesis
rkg00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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