KEGG   PATHWAY: rvl00900
Entry
rvl00900                    Pathway                                
Name
Terpenoid backbone biosynthesis - Rhododendron vialii
Description
Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.
Class
Metabolism; Metabolism of terpenoids and polyketides
Pathway map
rvl00900  Terpenoid backbone biosynthesis
rvl00900

Module
rvl_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:rvl00900]
rvl_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:rvl00900]
rvl_M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:rvl00900]
Other DBs
GO: 0009240 0016091
Organism
Rhododendron vialii [GN:rvl]
Gene
131304679  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
131320877  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
131322763  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
131335841  1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic [KO:K00099] [EC:1.1.1.267]
131306343  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic [KO:K00991] [EC:2.7.7.60]
131312511  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic [KO:K00919] [EC:2.7.1.148]
131314879  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like [KO:K01770] [EC:4.6.1.12]
131314887  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like [KO:K01770] [EC:4.6.1.12]
131301222  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [KO:K03526] [EC:1.17.7.1 1.17.7.3]
131307886  4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like isoform X1 [KO:K03527] [EC:1.17.7.4]
131307887  4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like [KO:K03527] [EC:1.17.7.4]
131323429  acetyl-CoA acetyltransferase 2-like [KO:K00626] [EC:2.3.1.9]
131315183  acetyl-CoA acetyltransferase 2-like [KO:K00626] [EC:2.3.1.9]
131330398  acetyl-CoA acetyltransferase 2 [KO:K00626] [EC:2.3.1.9]
131331841  hydroxymethylglutaryl-CoA synthase [KO:K01641] [EC:2.3.3.10]
131304380  3-hydroxy-3-methylglutaryl-coenzyme A reductase 3-like [KO:K00021] [EC:1.1.1.34]
131307834  3-hydroxy-3-methylglutaryl-coenzyme A reductase-like [KO:K00021] [EC:1.1.1.34]
131330784  3-hydroxy-3-methylglutaryl coenzyme A reductase 1 [KO:K00021] [EC:1.1.1.34]
131299050  3-hydroxy-3-methylglutaryl coenzyme A reductase 2-B-like [KO:K00021] [EC:1.1.1.34]
131333322  mevalonate kinase-like [KO:K00869] [EC:2.7.1.36]
131333799  phosphomevalonate kinase, peroxisomal-like [KO:K00938] [EC:2.7.4.2]
131308225  phosphomevalonate kinase, peroxisomal-like isoform X1 [KO:K00938] [EC:2.7.4.2]
131318446  diphosphomevalonate decarboxylase 1-like [KO:K01597] [EC:4.1.1.33]
131300633  diphosphomevalonate decarboxylase 2-like [KO:K01597] [EC:4.1.1.33]
131311269  isopentenyl phosphate kinase [KO:K06981] [EC:2.7.4.26]
131301087  isopentenyl-diphosphate Delta-isomerase I isoform X1 [KO:K01823] [EC:5.3.3.2]
131321912  farnesyl pyrophosphate synthase isoform X1 [KO:K00787] [EC:2.5.1.1 2.5.1.10]
131326374  solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [KO:K14066] [EC:2.5.1.1]
131316031  solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X1 [KO:K14066] [EC:2.5.1.1]
131322402  heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
131308244  heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
131329733  geranylgeranyl pyrophosphate synthase, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
131330498  heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
131331072  geranylgeranyl pyrophosphate synthase, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
131329467  solanesyl diphosphate synthase 1, chloroplastic-like [KO:K05356] [EC:2.5.1.84 2.5.1.85]
131321391  dehydrodolichyl diphosphate synthase CPT3-like [KO:K11778] [EC:2.5.1.87]
131307901  uncharacterized protein LOC131307901 isoform X1 [KO:K11778] [EC:2.5.1.87]
131325987  cis-prenyltransferase 4, chloroplastic-like isoform X1 [KO:K11778] [EC:2.5.1.87]
131299084  dehydrodolichyl diphosphate synthase 6 [KO:K11778] [EC:2.5.1.87]
131309926  geranylgeranyl diphosphate reductase, chloroplastic-like [KO:K10960] [EC:1.3.1.83 1.3.1.111]
131309927  geranylgeranyl diphosphate reductase, chloroplastic-like [KO:K10960] [EC:1.3.1.83 1.3.1.111]
131313121  geranylgeranyl diphosphate reductase, chloroplastic-like [KO:K10960] [EC:1.3.1.83 1.3.1.111]
131323085  tricyclene synthase EBOS, chloroplastic-like isoform X1 [KO:K12742] [EC:4.2.3.27]
131323086  tricyclene synthase EBOS, chloroplastic-like isoform X1 [KO:K12742] [EC:4.2.3.27]
131323087  tricyclene synthase EBOS, chloroplastic-like isoform X1 [KO:K12742] [EC:4.2.3.27]
131323088  tricyclene synthase EBOS, chloroplastic-like [KO:K12742] [EC:4.2.3.27]
131323090  tricyclene synthase EBOS, chloroplastic-like [KO:K12742] [EC:4.2.3.27]
131323628  tricyclene synthase EBOS, chloroplastic-like [KO:K12742] [EC:4.2.3.27]
131323633  tricyclene synthase EBOS, chloroplastic-like [KO:K12742] [EC:4.2.3.27]
131316285  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [KO:K05955] [EC:2.5.1.58 2.5.1.59]
131304850  protein farnesyltransferase subunit beta [KO:K05954] [EC:2.5.1.58]
131319415  CAAX prenyl protease 2 isoform X1 [KO:K08658] [EC:3.4.26.1]
131318613  CAAX prenyl protease 1 homolog [KO:K06013] [EC:3.4.24.84]
131316421  protein-S-isoprenylcysteine O-methyltransferase B-like isoform X1 [KO:K00587] [EC:2.1.1.100]
131300970  probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 [KO:K15889] [EC:3.1.1.-]
131335958  probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 [KO:K15889] [EC:3.1.1.-]
131298138  isoprenylcysteine alpha-carbonyl methylesterase ICME-like [KO:K15889] [EC:3.1.1.-]
131335605  farnesylcysteine lyase [KO:K05906] [EC:1.8.3.5 1.8.3.6]
131331190  uncharacterized protein LOC131331190 [KO:K15891] [EC:1.1.1.354]
131314289  farnesol kinase, chloroplastic [KO:K15892] [EC:2.7.1.216]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00118  D-Glyceraldehyde 3-phosphate
C00129  Isopentenyl diphosphate
C00235  Dimethylallyl diphosphate
C00332  Acetoacetyl-CoA
C00341  Geranyl diphosphate
C00353  Geranylgeranyl diphosphate
C00356  (S)-3-Hydroxy-3-methylglutaryl-CoA
C00418  (R)-Mevalonate
C00448  trans,trans-Farnesyl diphosphate
C01107  (R)-5-Phosphomevalonate
C01126  (2E,6E)-Farnesol
C01143  (R)-5-Diphosphomevalonate
C01230  all-trans-Hexaprenyl diphosphate
C02321  cis-1,4-Polyisoprene
C03461  2-trans,6-trans-Farnesal
C04145  all-trans-Nonaprenyl diphosphate
C04146  all-trans-Octaprenyl diphosphate
C04216  all-trans-Heptaprenyl diphosphate
C04506  Protein C-terminal S-farnesyl-L-cysteine
C04574  di-trans,poly-cis-Undecaprenyl diphosphate
C04748  Protein C-terminal S-farnesyl-L-cysteine methyl ester
C05427  Phytyl diphosphate
C05859  ditrans,polycis-Polyprenyl diphosphate
C06081  Polyprenol
C11434  2-C-Methyl-D-erythritol 4-phosphate
C11435  4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11436  2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11437  1-Deoxy-D-xylulose 5-phosphate
C11453  2-C-Methyl-D-erythritol 2,4-cyclodiphosphate
C11811  1-Hydroxy-2-methyl-2-butenyl 4-diphosphate
C16521  Isoprene
C16826  2-cis,6-trans-Farnesyl diphosphate
C17432  all-trans-Decaprenyl diphosphate
C18321  trans,octacis-Decaprenyl diphosphate
C19691  Farnesylcysteine
C19760  2-cis,6-cis-Farnesyl diphosphate
C19852  tritrans,heptacis-Undecaprenyl diphosphate
C19853  trans,polycis-Polyprenyl diphosphate
C20120  S-Farnesyl protein
C20121  trans,trans-Farnesyl phosphate
C20345  Isopentenyl phosphate
C20847  (R)-Mevalonate 3-phosphate
C20848  (R)-Mevalonate 3,5-bisphosphate
C22453  trans-Anhydromevalonate 5-phosphate
Reference
  Authors
Lange BM, Ghassemian M.
  Title
Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
  Journal
Plant Mol Biol 51:925-48 (2003)
DOI:10.1023/A:1023005504702
Reference
  Authors
Saiki R, Nagata A, Kainou T, Matsuda H, Kawamukai M
  Title
Characterization of solanesyl and decaprenyl diphosphate synthases in mice and humans.
  Journal
FEBS J 272:5606-22 (2005)
DOI:10.1111/j.1742-4658.2005.04956.x
Reference
PMID:9858571
  Authors
Sato M, Sato K, Nishikawa S, Hirata A, Kato J, Nakano A
  Title
The yeast RER2 gene, identified by endoplasmic reticulum protein localization mutations, encodes cis-prenyltransferase, a key enzyme in dolichol synthesis.
  Journal
Mol Cell Biol 19:471-83 (1999)
DOI:10.1128/MCB.19.1.471
Reference
  Authors
Vannice JC, Skaff DA, Keightley A, Addo JK, Wyckoff GJ, Miziorko HM
  Title
Identification in Haloferax volcanii of phosphomevalonate decarboxylase and isopentenyl phosphate kinase as catalysts of the terminal enzyme reactions in an  archaeal alternate mevalonate pathway.
  Journal
J Bacteriol 196:1055-63 (2014)
DOI:10.1128/JB.01230-13
Related
pathway
rvl00010  Glycolysis / Gluconeogenesis
rvl00100  Steroid biosynthesis
rvl00130  Ubiquinone and other terpenoid-quinone biosynthesis
rvl00270  Cysteine and methionine metabolism
rvl00510  N-Glycan biosynthesis
rvl00902  Monoterpenoid biosynthesis
rvl00904  Diterpenoid biosynthesis
rvl00906  Carotenoid biosynthesis
rvl00908  Zeatin biosynthesis
rvl00909  Sesquiterpenoid and triterpenoid biosynthesis
KO pathway
ko00900   
LinkDB

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