KEGG   PATHWAY: sstn00900
Entry
sstn00900                   Pathway                                
Name
Terpenoid backbone biosynthesis - Solanum stenotomum
Description
Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.
Class
Metabolism; Metabolism of terpenoids and polyketides
Pathway map
sstn00900  Terpenoid backbone biosynthesis
sstn00900

Module
sstn_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:sstn00900]
sstn_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:sstn00900]
sstn_M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:sstn00900]
Other DBs
GO: 0009240 0016091
Organism
Solanum stenotomum [GN:sstn]
Gene
125863865  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
125878348  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
125843754  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
125858508  1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic [KO:K00099] [EC:1.1.1.267]
125870494  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic [KO:K00991] [EC:2.7.7.60]
125863437  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic [KO:K00919] [EC:2.7.1.148]
125842259  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [KO:K01770] [EC:4.6.1.12]
125843664  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [KO:K03526] [EC:1.17.7.1 1.17.7.3]
125871926  4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [KO:K03527] [EC:1.17.7.4]
125877013  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
125867885  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
125855605  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
125863167  LOW QUALITY PROTEIN: hydroxymethylglutaryl-CoA synthase-like [KO:K01641] [EC:2.3.3.10]
125841307  hydroxymethylglutaryl-CoA synthase-like [KO:K01641] [EC:2.3.3.10]
125841308  hydroxymethylglutaryl-CoA synthase-like [KO:K01641] [EC:2.3.3.10]
125842368  hydroxymethylglutaryl-CoA synthase-like [KO:K01641] [EC:2.3.3.10]
125847643  3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [KO:K00021] [EC:1.1.1.34]
125862908  3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [KO:K00021] [EC:1.1.1.34]
125849310  3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 [KO:K00021] [EC:1.1.1.34]
125856126  3-hydroxy-3-methylglutaryl coenzyme A reductase 1-like [KO:K00021] [EC:1.1.1.34]
125856209  3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [KO:K00021] [EC:1.1.1.34]
125858547  3-hydroxy-3-methylglutaryl-coenzyme A reductase 3 [KO:K00021] [EC:1.1.1.34]
125841789  mevalonate kinase [KO:K00869] [EC:2.7.1.36]
125878181  phosphomevalonate kinase, peroxisomal [KO:K00938] [EC:2.7.4.2]
125874063  phosphomevalonate kinase, peroxisomal-like isoform X1 [KO:K00938] [EC:2.7.4.2]
125856614  diphosphomevalonate decarboxylase 2-like [KO:K01597] [EC:4.1.1.33]
125844311  diphosphomevalonate decarboxylase 2-like [KO:K01597] [EC:4.1.1.33]
125854333  isopentenyl phosphate kinase isoform X1 [KO:K06981] [EC:2.7.4.26]
125868326  isopentenyl-diphosphate Delta-isomerase I [KO:K01823] [EC:5.3.3.2]
125855145  isopentenyl-diphosphate Delta-isomerase I-like [KO:K01823] [EC:5.3.3.2]
125862843  farnesyl pyrophosphate synthase-like [KO:K00787] [EC:2.5.1.1 2.5.1.10]
125864289  farnesyl pyrophosphate synthase [KO:K00787] [EC:2.5.1.1 2.5.1.10]
125864292  farnesyl pyrophosphate synthase-like isoform X1 [KO:K00787] [EC:2.5.1.1 2.5.1.10]
125842249  solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isoform X1 [KO:K14066] [EC:2.5.1.1]
125876156  heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
125854799  geranylgeranyl pyrophosphate synthase, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
125870474  heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
125843883  geranylgeranyl pyrophosphate synthase 7, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
125846746  geranylgeranyl pyrophosphate synthase, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
125846747  geranylgeranyl pyrophosphate synthase 7, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
125876287  solanesyl diphosphate synthase 1, chloroplastic-like [KO:K05356] [EC:2.5.1.84 2.5.1.85]
125848748  dehydrodolichyl diphosphate synthase CPT3-like [KO:K11778] [EC:2.5.1.87]
125864404  dehydrodolichyl diphosphate synthase CPT5, chloroplastic [KO:K11778] [EC:2.5.1.87]
125864406  cis-prenyltransferase 4, chloroplastic isoform X1 [KO:K11778] [EC:2.5.1.87]
125851101  dimethylallylcistransferase CPT1, chloroplastic [KO:K11778] [EC:2.5.1.87]
125852001  dehydrodolichyl diphosphate synthase CPT5, chloroplastic-like isoform X1 [KO:K11778] [EC:2.5.1.87]
125868944  (2Z,6Z)-farnesyl diphosphate synthase CPT6, chloroplastic-like [KO:K11778] [EC:2.5.1.87]
125872107  (2Z,6Z)-farnesyl diphosphate synthase CPT6, chloroplastic-like [KO:K11778] [EC:2.5.1.87]
125843845  (2Z,6Z)-farnesyl diphosphate synthase CPT6, chloroplastic [KO:K11778] [EC:2.5.1.87]
125872299  cis-prenyltransferase 7, chloroplastic-like [KO:K11778] [EC:2.5.1.87]
125860678  dehydrodolichyl diphosphate synthase CPT3 [KO:K11778] [EC:2.5.1.87]
125874025  cis-prenyltransferase 7, chloroplastic [KO:K11778] [EC:2.5.1.87]
125874711  uncharacterized protein LOC125874711 [KO:K11778] [EC:2.5.1.87]
125853391  geranylgeranyl diphosphate reductase, chloroplastic-like [KO:K10960] [EC:1.3.1.83 1.3.1.111]
125857621  geranylgeranyl diphosphate reductase, chloroplastic [KO:K10960] [EC:1.3.1.83 1.3.1.111]
125872546  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [KO:K05955] [EC:2.5.1.58 2.5.1.59]
125847811  protein farnesyltransferase subunit beta isoform X1 [KO:K05954] [EC:2.5.1.58]
125871733  LOW QUALITY PROTEIN: CAAX prenyl protease 2 [KO:K08658] [EC:3.4.26.1]
125877777  CAAX prenyl protease 1 homolog [KO:K06013] [EC:3.4.24.84]
125855577  protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [KO:K00587] [EC:2.1.1.100]
125849137  probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 isoform X1 [KO:K15889] [EC:3.1.1.-]
125868177  LOW QUALITY PROTEIN: probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 [KO:K15889] [EC:3.1.1.-]
125862063  farnesylcysteine lyase [KO:K05906] [EC:1.8.3.5 1.8.3.6]
125861995  uncharacterized protein LOC125861995 [KO:K15891] [EC:1.1.1.354]
125871255  probable phytol kinase 3, chloroplastic [KO:K15892] [EC:2.7.1.216]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00118  D-Glyceraldehyde 3-phosphate
C00129  Isopentenyl diphosphate
C00235  Dimethylallyl diphosphate
C00332  Acetoacetyl-CoA
C00341  Geranyl diphosphate
C00353  Geranylgeranyl diphosphate
C00356  (S)-3-Hydroxy-3-methylglutaryl-CoA
C00418  (R)-Mevalonate
C00448  trans,trans-Farnesyl diphosphate
C01107  (R)-5-Phosphomevalonate
C01126  (2E,6E)-Farnesol
C01143  (R)-5-Diphosphomevalonate
C01230  all-trans-Hexaprenyl diphosphate
C02321  cis-1,4-Polyisoprene
C03461  2-trans,6-trans-Farnesal
C04145  all-trans-Nonaprenyl diphosphate
C04146  all-trans-Octaprenyl diphosphate
C04216  all-trans-Heptaprenyl diphosphate
C04506  Protein C-terminal S-farnesyl-L-cysteine
C04574  di-trans,poly-cis-Undecaprenyl diphosphate
C04748  Protein C-terminal S-farnesyl-L-cysteine methyl ester
C05427  Phytyl diphosphate
C05859  ditrans,polycis-Polyprenyl diphosphate
C06081  Polyprenol
C11434  2-C-Methyl-D-erythritol 4-phosphate
C11435  4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11436  2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11437  1-Deoxy-D-xylulose 5-phosphate
C11453  2-C-Methyl-D-erythritol 2,4-cyclodiphosphate
C11811  1-Hydroxy-2-methyl-2-butenyl 4-diphosphate
C16521  Isoprene
C16826  2-cis,6-trans-Farnesyl diphosphate
C17432  all-trans-Decaprenyl diphosphate
C18321  trans,octacis-Decaprenyl diphosphate
C19691  Farnesylcysteine
C19760  2-cis,6-cis-Farnesyl diphosphate
C19852  tritrans,heptacis-Undecaprenyl diphosphate
C19853  trans,polycis-Polyprenyl diphosphate
C20120  S-Farnesyl protein
C20121  trans,trans-Farnesyl phosphate
C20345  Isopentenyl phosphate
C20847  (R)-Mevalonate 3-phosphate
C20848  (R)-Mevalonate 3,5-bisphosphate
C22453  trans-Anhydromevalonate 5-phosphate
Reference
  Authors
Lange BM, Ghassemian M.
  Title
Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
  Journal
Plant Mol Biol 51:925-48 (2003)
DOI:10.1023/A:1023005504702
Reference
  Authors
Saiki R, Nagata A, Kainou T, Matsuda H, Kawamukai M
  Title
Characterization of solanesyl and decaprenyl diphosphate synthases in mice and humans.
  Journal
FEBS J 272:5606-22 (2005)
DOI:10.1111/j.1742-4658.2005.04956.x
Reference
PMID:9858571
  Authors
Sato M, Sato K, Nishikawa S, Hirata A, Kato J, Nakano A
  Title
The yeast RER2 gene, identified by endoplasmic reticulum protein localization mutations, encodes cis-prenyltransferase, a key enzyme in dolichol synthesis.
  Journal
Mol Cell Biol 19:471-83 (1999)
DOI:10.1128/MCB.19.1.471
Reference
  Authors
Vannice JC, Skaff DA, Keightley A, Addo JK, Wyckoff GJ, Miziorko HM
  Title
Identification in Haloferax volcanii of phosphomevalonate decarboxylase and isopentenyl phosphate kinase as catalysts of the terminal enzyme reactions in an  archaeal alternate mevalonate pathway.
  Journal
J Bacteriol 196:1055-63 (2014)
DOI:10.1128/JB.01230-13
Related
pathway
sstn00010  Glycolysis / Gluconeogenesis
sstn00100  Steroid biosynthesis
sstn00130  Ubiquinone and other terpenoid-quinone biosynthesis
sstn00270  Cysteine and methionine metabolism
sstn00510  N-Glycan biosynthesis
sstn00902  Monoterpenoid biosynthesis
sstn00904  Diterpenoid biosynthesis
sstn00906  Carotenoid biosynthesis
sstn00908  Zeatin biosynthesis
sstn00909  Sesquiterpenoid and triterpenoid biosynthesis
KO pathway
ko00900   
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