KEGG   PATHWAY: sfm03440
Entry
sfm03440                    Pathway                                
Name
Homologous recombination - Scleropages formosus (Asian bonytongue)
Description
Homologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves the generation of a single-stranded region of DNA, followed by strand invasion, formation of a Holliday junction, DNA synthesis using the intact strand as a template, branch migration and resolution. It is investigated that RecA/Rad51 family proteins play a central role. The breast cancer susceptibility protein Brca2 and the RecQ helicase BLM (Bloom syndrome mutated) are tumor suppressors that maintain genome integrity, at least in part, through HR.
Class
Genetic Information Processing; Replication and repair
Pathway map
sfm03440  Homologous recombination
sfm03440

Other DBs
GO: 0000724
Organism
Scleropages formosus (Asian bonytongue) [GN:sfm]
Gene
108918079  xrcc3; DNA repair protein XRCC3 [KO:K10880]
108918991  brca1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
108919361  rad51; DNA repair protein RAD51 homolog 1 isoform X1 [KO:K04482]
108919967  uimc1; BRCA1-A complex subunit RAP80 isoform X1 [KO:K20775]
108920178  top3b; DNA topoisomerase 3-beta-1 [KO:K03165] [EC:5.6.2.1]
108920807  rad52; DNA repair protein RAD52 homolog [KO:K10873]
108920853  ssbp1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
108922568  babam2; BRISC and BRCA1-A complex member 2 [KO:K12173]
108924057  rad51b; DNA repair protein RAD51 homolog 2 isoform X1 [KO:K10869]
108924799  pold3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
108925508  mus81; crossover junction endonuclease MUS81 isoform X1 [KO:K08991] [EC:3.1.22.-]
108925891  pold4; DNA polymerase delta subunit 4 [KO:K03505]
108926439  palb2; partner and localizer of BRCA2 [KO:K10897]
108927769  rpa2; replication protein A 32 kDa subunit [KO:K10739]
108928130  rad51d; DNA repair protein RAD51 homolog 4 [KO:K10871]
108928154  rad51c; DNA repair protein RAD51 homolog 3 [KO:K10870]
108928924  bard1; BRCA1-associated RING domain protein 1 [KO:K10683]
108930547  babam1; BRISC and BRCA1-A complex member 1 isoform X1 [KO:K20776]
108931545  sycp3; synaptonemal complex protein 3 isoform X1 [KO:K19528]
108931681  blm; Bloom syndrome protein [KO:K10901] [EC:5.6.2.4]
108931702  xrcc2; DNA repair protein XRCC2 [KO:K10879]
108932039  rpa1; replication protein A 70 kDa DNA-binding subunit isoform X1 [KO:K07466]
108932148  brip1; Fanconi anemia group J protein [KO:K15362] [EC:5.6.2.3]
108932455  mre11; double-strand break repair protein MRE11 isoform X1 [KO:K10865]
108932475  atm; serine-protein kinase ATM isoform X1 [KO:K04728] [EC:2.7.11.1]
108934381  rad50; DNA repair protein RAD50 [KO:K10866] [EC:3.6.-.-]
108934448  brcc3; lys-63-specific deubiquitinase BRCC36 [KO:K11864] [EC:3.4.19.-]
108935182  abraxas1; BRCA1-A complex subunit Abraxas 1 [KO:K20774]
108935623  rpa3; replication protein A 14 kDa subunit [KO:K10740]
108940013  eme1; crossover junction endonuclease EME1 [KO:K10882] [EC:3.1.22.-]
108940334  pold2; DNA polymerase delta subunit 2 [KO:K02328]
108940499  rad54b; DNA repair and recombination protein RAD54B isoform X1 [KO:K10877] [EC:5.6.2.-]
108940566  nbn; nibrin isoform X1 [KO:K10867]
108941735  pold1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
108941778  top3a; DNA topoisomerase 3-alpha [KO:K03165] [EC:5.6.2.1]
108941845  brca2; breast cancer type 2 susceptibility protein isoform X1 [KO:K08775]
108942104  topbp1; DNA topoisomerase 2-binding protein 1 isoform X1 [KO:K10728]
108942224  rbbp8; DNA endonuclease RBBP8 [KO:K20773] [EC:3.1.-.-]
Reference
  Authors
Maloisel L, Fabre F, Gangloff S.
  Title
DNA polymerase delta is preferentially recruited during homologous recombination to promote heteroduplex DNA extension.
  Journal
Mol Cell Biol 28:1373-82 (2008)
DOI:10.1128/MCB.01651-07
Reference
  Authors
Haruta-Takahashi N, Iwasaki H.
  Title
[Recombination mediators]
  Journal
Seikagaku 79:449-53 (2007)
Reference
  Authors
Ouyang KJ, Woo LL, Ellis NA.
  Title
Homologous recombination and maintenance of genome integrity: Cancer and aging through the prism of human RecQ helicases.
  Journal
Mech Ageing Dev 129:425-40 (2008)
DOI:10.1016/j.mad.2008.03.003
Reference
  Authors
Kawabata M, Kawabata T, Nishibori M.
  Title
Role of recA/RAD51 family proteins in mammals.
  Journal
Acta Med Okayama 59:1-9 (2005)
DOI:10.18926/AMO/31987
Reference
  Authors
Prado F, Cortes-Ledesma F, Huertas P, Aguilera A.
  Title
Mitotic recombination in Saccharomyces cerevisiae.
  Journal
Curr Genet 42:185-98 (2003)
DOI:10.1007/s00294-002-0346-3
Reference
  Authors
Heyer WD, Li X, Rolfsmeier M, Zhang XP.
  Title
Rad54: the Swiss Army knife of homologous recombination?
  Journal
Nucleic Acids Res 34:4115-25 (2006)
DOI:10.1093/nar/gkl481
Reference
  Authors
Michel B, Boubakri H, Baharoglu Z, LeMasson M, Lestini R.
  Title
Recombination proteins and rescue of arrested replication forks.
  Journal
DNA Repair (Amst) 6:967-80 (2007)
DOI:10.1016/j.dnarep.2007.02.016
KO pathway
ko03440   

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