KEGG   PATHWAY: shew00020
Entry
shew00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Shewanella sp. WE21
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
shew00020  Citrate cycle (TCA cycle)
shew00020

Module
shew_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:shew00020]
shew_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:shew00020]
shew_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:shew00020]
shew_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:shew00020]
shew_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:shew00020]
shew_M00982  Methylcitrate cycle [PATH:shew00020]
Other DBs
GO: 0006099
Organism
Shewanella sp. WE21 [GN:shew]
Gene
CKQ84_00870  [KO:K00030] [EC:1.1.1.41]
CKQ84_03180  [KO:K26318]
CKQ84_04120  [KO:K00024] [EC:1.1.1.37]
CKQ84_05320  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CKQ84_05350  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CKQ84_05355  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
CKQ84_05360  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CKQ84_05485  frdB; succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K25995]
CKQ84_05490  [KO:K00233]
CKQ84_05495  [KO:K25996]
CKQ84_05500  [KO:K25996]
CKQ84_05835  [KO:K01659] [EC:2.3.3.5]
CKQ84_08960  [KO:K01610] [EC:4.1.1.49]
CKQ84_11020  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CKQ84_11225  frdB; succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K25995]
CKQ84_11230  [KO:K00233]
CKQ84_11235  [KO:K25996]
CKQ84_18385  [KO:K01676] [EC:4.2.1.2]
CKQ84_21230  [KO:K00031] [EC:1.1.1.42]
CKQ84_21415  [KO:K01902] [EC:6.2.1.5]
CKQ84_21420  [KO:K01903] [EC:6.2.1.5]
CKQ84_21425  [KO:K00658] [EC:2.3.1.61]
CKQ84_21430  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
CKQ84_21435  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CKQ84_21440  [KO:K00239] [EC:1.3.5.1]
CKQ84_21445  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CKQ84_21450  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CKQ84_21455  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
shew00010  Glycolysis / Gluconeogenesis
shew00053  Ascorbate and aldarate metabolism
shew00061  Fatty acid biosynthesis
shew00071  Fatty acid degradation
shew00190  Oxidative phosphorylation
shew00220  Arginine biosynthesis
shew00250  Alanine, aspartate and glutamate metabolism
shew00280  Valine, leucine and isoleucine degradation
shew00350  Tyrosine metabolism
shew00470  D-Amino acid metabolism
shew00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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