KEGG   PATHWAY: spu00270
Entry
spu00270                    Pathway                                
Name
Cysteine and methionine metabolism - Strongylocentrotus purpuratus (purple sea urchin)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
spu00270  Cysteine and methionine metabolism
spu00270

Module
spu_M00034  Methionine salvage pathway [PATH:spu00270]
spu_M00035  Methionine degradation [PATH:spu00270]
spu_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:spu00270]
Other DBs
GO: 0006534 0006555
Organism
Strongylocentrotus purpuratus (purple sea urchin) [GN:spu]
Gene
587322  cysteine synthase-like [KO:K01738] [EC:2.5.1.47]
762952  cystathionine gamma-lyase [KO:K01758] [EC:4.4.1.1]
593717  kynurenine--oxoglutarate transaminase 3 isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
115918127  kynurenine--oxoglutarate transaminase 3-like isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
591266  cystathionine beta-synthase [KO:K01697] [EC:4.2.1.22]
105443556  cystathionine beta-synthase-like [KO:K01697] [EC:4.2.1.22]
575553  betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
105438577  betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
588895  betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
580174  betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
115918144  S-methylmethionine--homocysteine S-methyltransferase BHMT2-like [KO:K00544] [EC:2.1.1.5]
589758  S-methylmethionine--homocysteine S-methyltransferase BHMT2 [KO:K00544] [EC:2.1.1.5]
105447246  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
115918913  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
582813  betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
579857  betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
752628  betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
115929946  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
115928328  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
100891161  betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
105447242  uncharacterized protein LOC105447242 [KO:K00547] [EC:2.1.1.10]
579215  methionine synthase [KO:K00548] [EC:2.1.1.13]
548618  methionine adenosyltransferase [KO:K00789] [EC:2.5.1.6]
577812  methionine adenosyltransferase 2 subunit beta [KO:K00789] [EC:2.5.1.6]
594552  methionine adenosyltransferase 2 subunit beta [KO:K00789] [EC:2.5.1.6]
756698  S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
591935  spermidine synthase [KO:K00797] [EC:2.5.1.16]
584264  spermine synthase [KO:K00802] [EC:2.5.1.22]
115919270  spermine synthase-like [KO:K00802] [EC:2.5.1.22]
580214  S-methyl-5'-thioadenosine phosphorylase [KO:K00772] [EC:2.4.2.28]
763844  methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
575411  LOW QUALITY PROTEIN: methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
589826  uncharacterized protein LOC589826 [KO:K16054] [EC:4.2.1.109 3.1.3.77]
589774  enolase-phosphatase E1 [KO:K09880] [EC:3.1.3.77]
584367  LOW QUALITY PROTEIN: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
592114  tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
579000  glycine N-methyltransferase-like [KO:K00552] [EC:2.1.1.20]
575025  glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
580044  glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
752758  glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
105438157  glycine N-methyltransferase-like [KO:K00552] [EC:2.1.1.20]
105439109  glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
589953  glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
579441  LOW QUALITY PROTEIN: glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
574665  DNA (cytosine-5)-methyltransferase PliMCI [KO:K00558] [EC:2.1.1.37]
582367  DNA (cytosine-5)-methyltransferase 3A isoform X1 [KO:K17398] [EC:2.1.1.37]
574714  adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
592592  S-adenosylhomocysteine hydrolase-like protein 1 isoform X1 [KO:K01251] [EC:3.13.2.1]
583254  branched-chain-amino-acid aminotransferase, cytosolic [KO:K00826] [EC:2.6.1.42]
115919491  branched-chain-amino-acid aminotransferase, cytosolic-like [KO:K00826] [EC:2.6.1.42]
594821  alanine--glyoxylate aminotransferase 2, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
589474  glutamate--cysteine ligase catalytic subunit [KO:K11204] [EC:6.3.2.2]
590426  glutamate--cysteine ligase regulatory subunit [KO:K11205]
585694  glutathione synthetase [KO:K21456] [EC:6.3.2.3]
591446  glutathione synthetase [KO:K21456] [EC:6.3.2.3]
105437067  glutathione synthetase-like [KO:K21456] [EC:6.3.2.3]
115921023  glutathione synthetase-like [KO:K21456] [EC:6.3.2.3]
575999  cysteine dioxygenase type 1 [KO:K00456] [EC:1.13.11.20]
589279  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
592180  aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
579342  3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
579216  thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
591646  thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
115923577  thiosulfate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
105446068  thiosulfate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
591629  thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
762715  thiosulfate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
115924254  3-mercaptopyruvate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
579278  thiosulfate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
586683  L-lactate dehydrogenase isoform X1 [KO:K00016] [EC:1.1.1.27]
115917976  L-lactate dehydrogenase-like isoform X1 [KO:K00016] [EC:1.1.1.27]
578025  uncharacterized protein LOC578025 [KO:K05396] [EC:4.4.1.15]
576624  putative D-cysteine desulfhydrase 1, mitochondrial [KO:K05396] [EC:4.4.1.15]
582492  bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial [KO:K05396] [EC:4.4.1.15]
591789  bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial [KO:K05396] [EC:4.4.1.15]
591635  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
587163  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
115926793  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
594261  L-serine dehydratase/L-threonine deaminase isoform X1 [KO:K17989] [EC:4.3.1.17 4.3.1.19]
590971  D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
580016  phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
spu00010  Glycolysis / Gluconeogenesis
spu00250  Alanine, aspartate and glutamate metabolism
spu00260  Glycine, serine and threonine metabolism
spu00290  Valine, leucine and isoleucine biosynthesis
spu00430  Taurine and hypotaurine metabolism
spu00480  Glutathione metabolism
spu00620  Pyruvate metabolism
spu00640  Propanoate metabolism
spu00770  Pantothenate and CoA biosynthesis
spu00900  Terpenoid backbone biosynthesis
spu00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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