KEGG   PATHWAY: tfd03430
Entry
tfd03430                    Pathway                                
Name
Mismatch repair - Tachysurus fulvidraco (yellow catfish)
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
tfd03430  Mismatch repair
tfd03430

Other DBs
GO: 0006298
Organism
Tachysurus fulvidraco (yellow catfish) [GN:tfd]
Gene
113634358  lig1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
113637163  pms2; mismatch repair endonuclease PMS2 isoform X2 [KO:K10858]
113637639  msh3; DNA mismatch repair protein Msh3 isoform X1 [KO:K08736]
113638189  rfc3; replication factor C subunit 3 [KO:K10756]
113641171  pold1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
113641811  mlh3; DNA mismatch repair protein Mlh3 isoform X2 [KO:K08739]
113642481  pold4; DNA polymerase delta subunit 4 [KO:K03505]
113643510  rpa1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
113644653  rpa2; replication protein A 32 kDa subunit isoform X2 [KO:K10739]
113644982  mlh1; DNA mismatch repair protein Mlh1 isoform X1 [KO:K08734]
113645890  ssbp1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
113646650  rfc4; replication factor C subunit 4 [KO:K10755]
113649721  rfc2; replication factor C subunit 2 [KO:K10755]
113651971  pold3; DNA polymerase delta subunit 3 [KO:K03504]
113653349  rfc5; replication factor C subunit 5 isoform X1 [KO:K10756]
113654688  [KO:K10739]
113655319  msh6; DNA mismatch repair protein Msh6 isoform X1 [KO:K08737]
113656822  pold2; DNA polymerase delta subunit 2 [KO:K02328]
113658991  rpa3; replication protein A 14 kDa subunit [KO:K10740]
113660733  rfc1; replication factor C subunit 1 isoform X1 [KO:K10754]
113660869  pcna; proliferating cell nuclear antigen [KO:K04802]
113662030  exo1; exonuclease 1 [KO:K10746] [EC:3.1.-.-]
113662683  msh2; DNA mismatch repair protein Msh2 [KO:K08735]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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