KEGG   PATHWAY: xla04146
Entry
xla04146                    Pathway                                
Name
Peroxisome - Xenopus laevis (African clawed frog)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
xla04146  Peroxisome
xla04146

Other DBs
GO: 0005777
Organism
Xenopus laevis (African clawed frog) [GN:xla]
Gene
100036886  eci3.L; enoyl-CoA delta isomerase 2 isoform X1 [KO:K13239] [EC:5.3.3.8]
100101335  hao1.L; hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
100125664  cat.3.L; uncharacterized protein LOC100125664 [KO:K03781] [EC:1.11.1.6]
100137716  XB5872576.L; uncharacterized protein LOC100137716 [KO:K00659] [EC:2.3.1.65 3.1.2.2]
100158402  gnpat.S; dihydroxyacetone phosphate acyltransferase isoform X1 [KO:K00649] [EC:2.3.1.42]
100174803  acsl4.S; acyl-CoA synthetase long-chain family member 4 S homeolog [KO:K01897] [EC:6.2.1.3]
100381040  sod1.S; superoxide dismutase 1 S homeolog [KO:K04565] [EC:1.15.1.1]
100381171  amacr.L; alpha-methylacyl-CoA racemase L homeolog [KO:K01796] [EC:5.1.99.4]
108696002  acsl5.L; long-chain-fatty-acid--CoA ligase 5 isoform X1 [KO:K01897] [EC:6.2.1.3]
108696358  pex14.L; peroxisomal membrane protein PEX14 [KO:K13343]
108696540  pex10.L; peroxisome biogenesis factor 10 [KO:K13346]
108697333  pex5.S; peroxisomal targeting signal 1 receptor isoform X1 [KO:K13342]
108697519  pex14.S; peroxisomal membrane protein PEX14 [KO:K13343]
108697631  pex10.S; peroxisome biogenesis factor 10 isoform X1 [KO:K13346]
108697971  acox3.L; peroxisomal acyl-coenzyme A oxidase 3 [KO:K00232] [EC:1.3.3.6]
108698397  acsl4.L; long-chain-fatty-acid--CoA ligase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
108698557  crat.L; carnitine O-acetyltransferase [KO:K00624] [EC:2.3.1.7]
108698669  abcd4.L; lysosomal cobalamin transporter ABCD4 isoform X1 [KO:K05678] [EC:7.6.2.8]
108700390  [KO:K00649] [EC:2.3.1.42]
108701086  pxmp4.L; peroxisomal membrane protein 4 [KO:K13350]
108701271  XB5760632.L; peroxisomal N(1)-acetyl-spermine/spermidine oxidase [KO:K00308] [EC:1.5.3.13]
108702736  acot8.S; acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
108703003  agps.S; alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
108703045  ehhadh.S; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
108703071  idh1.S; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
108704695  crata.L; carnitine O-acetyltransferase isoform X1 [KO:K00624] [EC:2.3.1.7]
108705394  abcd1.L; ATP-binding cassette sub-family D member 1 [KO:K05675] [EC:7.6.2.4]
108706882  [KO:K13348]
108707222  nudt12.S; NAD-capped RNA hydrolase NUDT12 isoform X1 [KO:K03426] [EC:3.6.1.22]
108707337  baat.S; acyl-coenzyme A amino acid N-acyltransferase 1 isoform X1 [KO:K00659] [EC:2.3.1.65 3.1.2.2]
108707883  sod1.L; superoxide dismutase [Cu-Zn] B [KO:K04565] [EC:1.15.1.1]
108708038  nos2.L; nitric oxide synthase, inducible [KO:K13241] [EC:1.14.13.39]
108708888  nos2.S; nitric oxide synthase, inducible [KO:K13241] [EC:1.14.13.39]
108709617  pex12.S; peroxisome assembly protein 12 [KO:K13345]
108710919  acsl6.L; long-chain-fatty-acid--CoA ligase 6 isoform X3 [KO:K01897] [EC:6.2.1.3]
108711173  abcd2.L; ATP-binding cassette sub-family D member 2 [KO:K05676] [EC:7.6.2.4]
108711219  phyh.L; phytanoyl-CoA dioxygenase, peroxisomal [KO:K00477] [EC:1.14.11.18]
108711336  [KO:K08746] [EC:6.2.1.- 6.2.1.3]
108711446  idh2.L; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
108711457  pex11a.L; peroxisomal membrane protein 11A isoform X1 [KO:K13351]
108712893  slc27a2.S; very long-chain acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
108712916  pex11g.L; peroxisomal membrane protein 11C isoform X1 [KO:K13353]
108713083  abcd2.S; ATP-binding cassette sub-family D member 2 [KO:K05676] [EC:7.6.2.4]
108713455  [KO:K03781] [EC:1.11.1.6]
108714042  nudt7.L; peroxisomal coenzyme A diphosphatase NUDT7 [KO:K17879] [EC:3.6.1.77]
108715153  prdx5.S; peroxiredoxin-5, mitochondrial [KO:K11187] [EC:1.11.1.24]
108715227  cat.2.S; catalase [KO:K03781] [EC:1.11.1.6]
108715253  cat.3.S; catalase [KO:K03781] [EC:1.11.1.6]
108715437  mlycd.S; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
108715630  mvk.L; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
108716095  xdh.L; xanthine dehydrogenase/oxidase isoform X1 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
108716181  hmgcll1.L; hydroxymethylglutaryl-CoA lyase, mitochondrial [KO:K01640] [EC:4.1.3.4]
108716203  pex5l.L; PEX5-related protein isoform X1 [KO:K13342]
108716596  pex13.L; peroxisomal membrane protein PEX13 [KO:K13344]
108716665  [KO:K04564] [EC:1.15.1.1]
108716830  ddo.L; D-aspartate oxidase isoform X1 [KO:K00272] [EC:1.4.3.1]
108717083  acsl3.L; long-chain-fatty-acid--CoA ligase 3 isoform X1 [KO:K01897] [EC:6.2.1.3]
108717383  xdh.S; xanthine dehydrogenase/oxidase-like [KO:K00106] [EC:1.17.1.4 1.17.3.2]
108717451  pex5l.S; PEX5-related protein isoform X4 [KO:K13342]
108717631  [KO:K13339]
108718152  acsl3.S; long-chain-fatty-acid--CoA ligase 3 [KO:K01897] [EC:6.2.1.3]
108718166  agxt.S; serine--pyruvate aminotransferase isoform X1 [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
108719303  pex2.L; peroxisome biogenesis factor 2 [KO:K06664]
108719672  [KO:K13338]
108719881  crot.S; peroxisomal carnitine O-octanoyltransferase [KO:K05940] [EC:2.3.1.137]
121393106  [KO:K00659] [EC:2.3.1.65 3.1.2.2]
379278  far1.L; fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
379352  acsl1.L; acyl-CoA synthetase long chain family member 1 protein L homeolog [KO:K01897] [EC:6.2.1.3]
379716  pex11b.S; peroxisomal biogenesis factor 11 beta S homeolog [KO:K13352]
379895  gstk1.L; glutathione S-transferase kappa 1 L homeolog [KO:K13299] [EC:2.5.1.18]
380013  idh2.S; isocitrate dehydrogenase 2 (NADP+), mitochondrial S homeolog [KO:K00031] [EC:1.1.1.42]
380135  acsl1.S; acyl-CoA synthetase long chain family member 1 protein S homeolog [KO:K01897] [EC:6.2.1.3]
380236  cat.2.L; catalase, gene 2 L homeolog [KO:K03781] [EC:1.11.1.6]
380296  acaa1.L; 3-ketoacyl-CoA thiolase, peroxisomal [KO:K07513] [EC:2.3.1.16]
398137  agxt.L; alanine-glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
398157  slc25a17.L; solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein, 34kDa), member 17 L homeolog [KO:K13354]
398483  slc27a2.L; very long-chain acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
398510  hao2.L; uncharacterized protein LOC398510 [KO:K11517] [EC:1.1.3.15]
399063  far1.S; uncharacterized protein LOC399063 [KO:K13356] [EC:1.2.1.84]
403357  acox1.S; peroxisomal acyl-coenzyme A oxidase 1 [KO:K00232] [EC:1.3.3.6]
414480  acox2.L; acyl-CoA oxidase 2, branched chain L homeolog [KO:K10214] [EC:1.17.99.3]
432040  abcd3.S; ATP binding cassette subfamily D member 3 S homeolog [KO:K05677] [EC:7.6.2.4]
432233  hmgcl.S; 3-hydroxy-3-methylglutaryl-CoA lyase S homeolog [KO:K01640] [EC:4.1.3.4]
432262  prdx1.L; uncharacterized protein LOC432262 [KO:K13279] [EC:1.11.1.24]
432288  pex16.S; peroxisomal membrane protein PEX16 [KO:K13335]
443792  decr2.L; 2,4-dienoyl-CoA reductase 2 L homeolog [KO:K13237] [EC:1.3.1.124]
443867  pex1.L; peroxisomal biogenesis factor 1 L homeolog [KO:K13338]
443911  prdx1.S; peroxiredoxin 1 S homeolog [KO:K13279] [EC:1.11.1.24]
443922  crat.S; carnitine O-acetyltransferase b L homeolog [KO:K00624] [EC:2.3.1.7]
444006  prdx5.L; peroxiredoxin 5 L homeolog precursor [KO:K11187] [EC:1.11.1.24]
444067  pex3.L; peroxisomal biogenesis factor 3 L homeolog [KO:K13336]
444203  sod2.S; superoxide dismutase 2 S homeolog [KO:K04564] [EC:1.15.1.1]
444492  hsd17b4.L; hydroxysteroid (17-beta) dehydrogenase 4 L homeolog [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
444538  hao2.S; hydroxyacid oxidase 2 (long chain) S homeolog [KO:K11517] [EC:1.1.3.15]
444573  [KO:K00649] [EC:2.3.1.42]
444770  ech1.L; enoyl-CoA hydratase 1, peroxisomal L homeolog [KO:K12663] [EC:5.3.3.21]
444771  dhrs4.L; dehydrogenase/reductase SDR family member 4 [KO:K11147] [EC:1.1.-.-]
446332  phyh.S; phytanoyl-CoA 2-hydroxylase S homeolog [KO:K00477] [EC:1.14.11.18]
446346  pex12.L; peroxisomal biogenesis factor 12 L homeolog [KO:K13345]
446355  mpv17l2.L; MPV17 mitochondrial membrane protein-like 2 L homeolog [KO:K13348]
446408  agps.L; alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
446477  pex26.L; peroxisomal biogenesis factor 26 L homeolog [KO:K13340]
446657  hacl1.L; 2-hydroxyacyl-CoA lyase 1 L homeolog [KO:K12261] [EC:4.1.2.63]
446674  pecr.S; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
446751  nudt13.L; nudix hydrolase 13 L homeolog [KO:K03426] [EC:3.6.1.22]
446961  mpv17.L; protein Mpv17 isoform X1 [KO:K13348]
447032  ephx2.L; epoxide hydrolase 2, cytoplasmic L homeolog [KO:K08726] [EC:3.3.2.10 3.1.3.76]
447298  mpv17l.S; mpv17-like protein [KO:K13349]
447790  pex11b.L; peroxisomal biogenesis factor 11 beta L homeolog [KO:K13352]
494713  idh1.L; isocitrate dehydrogenase 1 [KO:K00031] [EC:1.1.1.42]
494715  scp2.L; sterol carrier protein 2 L homeolog [KO:K08764] [EC:2.3.1.176]
495171  slc25a17.S; solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein, 34kDa), member 17 S homeolog [KO:K13354]
495198  nudt12.L; nudix hydrolase 12 L homeolog [KO:K03426] [EC:3.6.1.22]
495468  abcd1.S; ATP-binding cassette sub-family D member 1 [KO:K05675] [EC:7.6.2.4]
495472  paox.L; polyamine oxidase (exo-N4-amino) L homeolog [KO:K00308] [EC:1.5.3.13]
495840  cat.1.L; catalase, gene 1 L homeolog [KO:K03781] [EC:1.11.1.6]
495980  nudt19.L; nucleoside diphosphate-linked moiety X motif 19 [KO:K13355] [EC:3.6.1.77]
496023  pxmp2.L; peroxisomal membrane protein 2 L homeolog [KO:K13347]
496096  pex19.S; uncharacterized protein LOC496096 [KO:K13337]
733180  pex19.L; peroxisomal biogenesis factor 19 L homeolog [KO:K13337]
734753  gstk1.S; uncharacterized protein LOC734753 [KO:K13299] [EC:2.5.1.18]
734816  pmvk.L; uncharacterized protein LOC734816 [KO:K13273] [EC:2.7.4.2]
734873  eci2.L; enoyl-CoA delta isomerase 2 L homeolog [KO:K13239] [EC:5.3.3.8]
735081  pex11g.S; peroxisomal biogenesis factor 11 gamma S homeolog [KO:K13353]
735104  dao.L; D-amino-acid oxidase L homeolog [KO:K00273] [EC:1.4.3.3]
735186  pipox.L; pipecolic acid oxidase L homeolog [KO:K00306] [EC:1.5.3.1 1.5.3.7]
735228  acox1.L; acyl-CoA oxidase 1, palmitoyl L homeolog [KO:K00232] [EC:1.3.3.6]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
xla00071  Fatty acid degradation
xla00120  Primary bile acid biosynthesis
xla00230  Purine metabolism
xla00564  Glycerophospholipid metabolism
xla00565  Ether lipid metabolism
xla00830  Retinol metabolism
xla00900  Terpenoid backbone biosynthesis
xla03320  PPAR signaling pathway
KO pathway
ko04146   

DBGET integrated database retrieval system