Pathway-based Classification of Diseases

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 Carbohydrate metabolism
   nt06031  Citrate cycle and pyruvate metabolism
     H01225  D-2-hydroxyglutaric aciduria
     H01096  Pyruvate kinase deficiency
     H00072  Pyruvate dehydrogenase complex deficiency
     H01997  Pyruvate dehydrogenase E1-alpha deficiency
     H01998  Pyruvate dehydrogenase E1-beta deficiency
     H01999  Pyruvate dehydrogenase E2 deficiency
     H02000  Dihydrolipoamide dehydrogenase deficiency
     H00073  Pyruvate carboxylase deficiency
     H02520  Phosphoenolpyruvate carboxykinase deficiency
     H01022  Diseases of the tricarboxylic acid cycle
     H02004  Fumarase deficiency
     H02006  Alpha-ketoglutarate dehydrogenase complex deficiency
     H02113  Infantile cerebellar-retinal degeneration
     H02562  Yoon-Bellen neurodevelopmental syndrome
     H02005  Mitochondrial complex II deficiency
   nt06017  Glycogen metabolism
     H00069  Glycogen storage disease
     H01939  Glycogen storage disease type I
     H01940  Glycogen storage disease type II
     H01941  Glycogen storage disease type III
     H01942  Glycogen storage disease type IV
     H01943  Glycogen storage disease type V
     H01944  Glycogen storage disease type VI
     H01945  Glycogen storage disease type VII
     H01946  Glycogen storage disease type XI
     H01947  Fanconi-Bickel syndrome
     H01949  Glycogen storage disease type 0b
     H01950  Glycogen storage disease type 0a
     H01951  Glycogen storage disease type X
     H01952  Glycogen storage disease type XII
     H01953  Glycogen storage disease type XIII
     H01955  Glycogen storage disease type XV
   nt06023  Galactose degradation
 
 Lipid/glycolipid metabolism
   nt06020  beta-Oxidation in mitochondria
     H01589  Systemic primary carnitine deficiency
     H01981  Carnitine palmitoyltransferase I deficiency
     H01982  Carnitine palmitoyltransferase II deficiency
     H01983  Carnitine-acylcarnitine translocase deficiency
     H00392  VLCAD deficiency
     H00488  MCAD deficiency
     H00489  LCHAD deficiency
     H00525  Disorders of mitochondrial fatty-acid oxidation
     H01352  Mitochondrial trifunctional protein deficiency
     H01364  3-Hydroxyacyl-CoA dehydrogenase deficiency
     H01980  SCAD deficiency
   nt06021  beta-Oxidation in peroxisome
     H02099  Alpha-methylacyl-CoA racemase deficiency
     H00407  Peroxisomal beta-oxidation enzyme deficiency
     H00874  Leukoencephalopathy with dystonia and motor neuropathy
     H02096  Peroxisomal acyl-CoA oxidase deficiency
     H02098  D-bifunctional protein deficiency
   nt06034  Cholesterol biosynthesis
     H01143  Vitamin D-dependent rickets
     H00161  Smith-Lemli-Opitz syndrome
     H00206  Mevalonate kinase deficiency
     H00617  Desmosterolosis
     H01281  Lathosterolosis
     H01933  Porokeratosis
     H02132  Microcephaly syndrome
     H00447  HEM skeletal dysplasia
     H00496  Congenital hemidysplasia with ichthyosiform nevus and limb defects (CHILD)
     H01194  X-linked chondrodysplasia punctata
     H02303  Alopecia-mental retardation syndrome
     H01917  CK syndrome
     H02248  MEND syndrome
   nt06019  Steroid hormone biosynthesis
     H00216  Congenital adrenal hyperplasia
     H01111  Cortisone reductase deficiency
     H00259  Apparent mineralocorticoid excess syndrome
     H00258  Aldosterone synthase deficiency
     H02314  Adrenal insufficiency, congenital, with 46XY sex reversal, partial or complete
     H01163  Corticosteroid-binding globulin (CBG) deficiency
     H00794  Aromatase excess syndrome
     H02020  Aromatase deficiency
     H00607  46,XY gonadal dysgenesis
     H00608  46,XY disorder of sex development due to testosterone secretion defect
   nt06022  Bile acid biosynthesis
     H00151  Cerebrotendinous xanthomatosis
     H00628  Congenital bile acid synthesis defect
   nt06014  Sphingolipid degradation
     H00423  Sphingolipidosis
     H00124  GM2 gangliosidoses
     H00281  GM1 gangliosidosis
     H02016  Tay-Sachs disease
     H02017  Sandhoff disease
     H00125  Fabry disease
     H00127  Metachromatic leukodystrophy
     H00126  Gaucher disease
     H00137  Niemann-Pick disease type A/B
     H00138  Farber lipogranulomatosis
     H00135  Krabbe disease
 
 Nucleotide metabolism
   nt06027  Purine salvage pathway
     H00194  Lesch-Nyhan syndrome
     H00195  Adenine phosphoribosyltransferase deficiency
 
 Amino acid metabolism
   nt06033  Glycine, serine and arginine metabolism
     H01079  3-Phosphoglycerate dehydrogenase (3-PGDH) deficiency
     H01082  Phosphoserine aminotransferase deficiency
     H02116  Phosphoserine phosphatase deficiency
     H01003  Dimethylglycine dehydrogenase deficiency
     H00191  Nonketotic hyperglycinemia
     H02657  Sarcosinemia
     H00190  Hyperprolinemia
     H00189  Ornithinaemia
     H02919  Bachmann-Bupp syndrome
     H01894  Multiple mitochondrial dysfunctions syndrome
     H00849  Cerebral creatine deficiency syndrome
     H02117  Neu-Laxova syndrome
     H00597  Snyder-Robinson syndrome
     H02918  Neurodevelopmental disorder with cardiomyopathy, spasticity, and brain abnormalities
   nt06030  Methionine metabolism
     H00182  Cystathioninuria
     H00183  Homocystinuria
     H00184  Hypermethioninemia
   nt06024  Valine, leucine and isoleucine degradation
   nt06036  Lysine degradation
   nt06010  Urea cycle
   nt06037  Histidine metabolism
     H01262  Formiminotransferase deficiency
     H00171  Histidinemia
     H01233  Urocanase deficiency
     H00862  Tourette syndrome
   nt06016  Phenylalanine and tyrosine metabolism
     H00167  Phenylketonuria
     H00163  Alkaptonuria
     H00165  Tyrosinemia
   nt06028  Dopamine and serotonin metabolism
     H01005  Dopamine beta-hydroxylase deficiency
     H01161  Aromatic L-amino acid decarboxylase deficiency
     H02597  Sepiapterin reductase deficiency
     H00548  Brunner syndrome
     H01895  Attention deficit hyperactivity disorder (ADHD)
     H01646  Major depressive disorder
     H00057  Parkinson disease
     H02557  Dopa-responsive dystonia
     H02676  Infantile-onset parkinsonism-dystonia
     H00168  Oculocutaneous albinism
   nt06026  Glutathione biosynthesis
     H00668  Anemia due to disorders of glutathione metabolism
     H02313  5-Oxoprolinase deficiency
     H02312  Glutathione synthetase deficiency
     H01375  Glucose 6-phosphate dehydrogenase deficiency
     H01825  Spondylometaphyseal dysplasia, Sedaghatian type
 
 Glycan/glycoprotein metabolism
   nt06015  N-Glycan biosynthesis
     H00118  Congenital disorders of glycosylation type I
     H00119  Congenital disorders of glycosylation type II
   nt06013  O-Glycan biosynthesis
     H01959  Muscular dystrophy-dystroglycanopathy type C
     H00120  Muscular dystrophy-dystroglycanopathy type A
     H01960  Muscular dystrophy-dystroglycanopathy type B
     H02307  Muscular dystrophy-dystroglycanopathy
   nt06029  Glycosaminoglycan biosynthesis
     H02491  Immunoskeletal dysplasia with neurodevelopmental abnormalities
     H00255  Hypogonadotropic hypogonadism
     H00768  Autosomal recessive intellectual developmental disorder
     H00762  Spondyloepiphyseal dysplasia with congenital joint dislocations
     H00122  Multiple exostoses
     H01494  SEMD with joint laxity type
     H00494  Desbuquois syndrome
     H01498  Multiple joint dislocations, short stature, craniofacial dysmorphism, and congenital heart defects
     H01496  Spondyloocular syndrome
     H02551  Skeletal dysplasia with joint laxity and advanced bone age
     H01497  Temtamy preaxial brachydactyly syndrome
     H02239  Ehlers-Danlos syndrome, spondylodysplastic type
     H02246  Ehlers-Danlos syndrome musculocontractural type
   nt06012  Glycosaminoglycan degradation
     H00421  Mucopolysaccharidosis
     H00128  Mucopolysaccharidosis type I
     H00129  Mucopolysaccharidosis type II
     H00123  Mucopolysaccharidosis type IV
     H00131  Mucopolysaccharidosis type VI
     H00130  Mucopolysaccharidosis type III
     H00132  Mucopolysaccharidosis type VII
     H00133  Mucopolysaccharidosis type IX
   nt06018  GPI-anchor biosynthesis
     H01486  Multiple congenital anomalies-hypotonia-seizures syndrome
     H01487  CHIME syndrome
     H01127  PIGM-congenital disorder of glycosylation
     H01489  Inherited glycosylphosphatidylinositol deficiencies
     H01485  Autosomal recessive mental retardation-42
     H01488  Hyperphosphatasia with mental retardation syndrome
   nt06035  Blood group carbohydrate antigen biosynthesis
     H00119  Congenital disorders of glycosylation type II
 
 Cofactor/vitamin metabolism
   nt06032  Lipoic acid metabolism
     H02000  Dihydrolipoamide dehydrogenase deficiency
     H02438  Hyperglycinemia, lactic acidosis, and seizures
     H02518  Neonatal severe encephalopathy with lactic acidosis and brain abnormalities
     H02643  Lipoyltransferase 1 deficiency
   nt06038  Folate metabolism
     H01197  Dihydrofolate reductase deficiency
     H01262  Formiminotransferase deficiency
     H01003  Dimethylglycine dehydrogenase deficiency
     H02657  Sarcosinemia
     H00262  Neural tube defects, folate-sensitive
   nt06025  Molybdenum cofactor biosynthesis
   nt06011  Heme biosynthesis
   nt06538  Cobalamin transport and metabolism
     H01277  Vitamin B12 deficiency anaemia
     H01190  Transcobalamin II deficiency
     H00183  Homocystinuria
     H00174  Methylmalonic aciduria
     H02221  Methylmalonic aciduria and homocystinuria
     H02222  Methylmalonic acidemia and hyperhomocysteinemia, cblX type
     H00063  Spinocerebellar ataxia (SCA)
     H00604  Deafness, autosomal dominant
     H00262  Neural tube defects, folate-sensitive
 
 Replication and repair
 
 Signal transduction
 
 Cellular process
   nt06523  Epigenetic regulation by Polycomb complexes
   nt06512  Chromosome cohesion and segregation
   nt06515  Regulation of kinetochore-microtubule interactions
   nt06534  Unfolded protein response
   nt06532  Autophagy
   nt06536  Mitophagy
   nt06535  Efferocytosis
   nt06524  Apoptosis
   nt06525  Ferroptosis
     H01145  Atransferrinemia
     H01196  Hypochromic microcytic anemia
     H02206  Aceruloplasminemia
     H00668  Anemia due to disorders of glutathione metabolism
     H02312  Glutathione synthetase deficiency
     H00833  Neurodegeneration with brain iron accumulation
     H00211  Hemochromatosis
     H01938  Hypermanganesemia with dystonia
     H00480  X-linked intellectual developmental disorder
     H01825  Spondylometaphyseal dysplasia, Sedaghatian type
   nt06527  Necroptosis
   nt06529  Thermogenesis
   nt06539  Cytoskeleton in muscle cells
   nt06541  Cytoskeleton in neurons
   nt06544  Neuroactive ligand signaling
   nt06545  Cornified envelope formation
 
 Immune system
 
 Endocrine system

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Last updated: October 15, 2025

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