SSDB Best Search Result

Entry:afw:Anae109_1007 (305 a.a.)
Name:DNA polymerase LigD polymerase domain
KO:K01971 bifunctional non-homologous end joining protein LigD

Search Result : 85 hits (reference genome only)

                 Entry                                       KO      len   SW-score  identity  overlap  
------------------------------------------------------------------ -------------------------------------
stp:Strop_3967 DNA primase, small subunit               K01971     302      989     0.540      298     
amd:AMED_4197 ATP-dependent DNA ligase                  K01971     299      930     0.520      302     
sen:SACE_3549 DNA ligase (ATP)                          K01971     302      919     0.531      288     
kfl:Kfla_5357 DNA polymerase LigD, polymerase domain pr K01971     308      886     0.497      302     
sgu:SGLAU_22865 DNA polymerase LigD, polymerase domain- K01971     290      862     0.505      287     
sco:SCO5308 conserved hypothetical protein              K01971     293      845     0.495      299     
ase:ACPL_519 DNA ligase (ATP)                           K01971     301      835     0.472      290     
sma:SAVERM_2946 putative DNA ligase                     K01971     293      826     0.473      296     
sgr:SGR_2196 conserved hypothetical protein             K01971     296      811     0.476      296     
nca:Noca_1237 ATP dependent DNA ligase                  K01971     304      758     0.468      293     
rha:RHA1_ro05048 DNA ligase (ATP)                       K01971     766      748     0.434      311     
sct:SCAT_5459 conserved protein of unknown function     K01971     298      737     0.428      297     
nfa:NFA_6770 putative ATP-dependent DNA ligase          K01971     808      736     0.437      302     
ccyc:SCMU_35490 ATP-dependent DNA ligase                K01971     899      726     0.427      295     
msm:MSMEG_5570 DNA ligase                               K01971     755      694     0.426      282     
rer:RER_45220 ATP-dependent DNA ligase LigD             K01971     758      691     0.406      281     
mtu:Rv0938 multifunctional non-homologous end joining D K01971     759      683     0.443      289     
mtc:MT0965 conserved hypothetical protein/DNA ligase    K01971     759      683     0.443      289     
gpo:GPOL_c05170 putative ATP-dependent DNA ligase       K01971     812      670     0.408      294     
mta:Moth_2067 conserved hypothetical protein            K01971     312      661     0.390      290     
mmi:MMAR_4573 ATP dependent DNA ligase                  K01971     770      651     0.401      304     
mva:Mvan_4915 ATP-dependent DNA ligase LigD ligase modu K01971     763      647     0.428      285     
mul:MUL_4434 ATP dependent DNA ligase                   K01971     770      647     0.398      304     
chy:CHY_0025 conserved hypothetical protein             K01971     293      644     0.378      283     
mab:MAB_1033 Putative ATP-dependent DNA ligase          K01971     750      633     0.420      276     
phe:Phep_1702 DNA ligase D                              K01971     877      587     0.347      288     
eba:ebA6655 ATP-dependent DNA ligase                    K01971     742      571     0.351      296     
sur:STAUR_6997 ATP dependent DNA ligase                 K01971     836      543     0.373      295     
bps:BPSS2211 putative ATP-dependent DNA ligase          K01971    1159      537     0.377      252     
xcc:XCC0105 ATP-dependent DNA ligase                    K01971    1001      533     0.353      283     
pjd:Pjdr2_4985 DNA polymerase LigD, polymerase domain p K01971     304      531     0.353      283     
sml:Smlt0053 putative ATP-dependent DNA ligase          K01971     828      522     0.337      294     
brh:RBRH_02846 ATP-dependent DNA ligase (EC 6.5.1.1)    K01971     309      517     0.347      300     
reh:H16_B2352 ATP-dependent DNA ligase                  K01971     910      514     0.356      253     
bpf:BpOF4_18445 ATP-dependent DNA ligase                K01971     578      510     0.339      295     
bxe:Bxe_A2328 ATP-dependent DNA ligase LigD phosphoeste K01971    1001      509     0.369      252     
sme:SMc03959 Probable ATP-dependent DNA ligase          K01971     865      506     0.342      281     
rsp:RSP_2679 ATP-dependent DNA ligase LigD polymerase m K01971     868      497     0.334      308     
bha:BH2209 BH2209; unknown conserved protein            K01971     611      497     0.378      246     
reu:Reut_B5079 ATP-dependent DNA ligase LigD phosphoest K01971     901      494     0.324      306     
sro:Sros_6714 DNA primase small subunit                            334      487     0.315      292     
oih:OB3034 hypothetical conserved protein               K01971     595      485     0.341      273     
xac:XAC2414 ATP-dependent DNA ligase                    K01971     872      485     0.344      270     
xau:Xaut_4365 DNA ligase D                              K01971     886      478     0.359      270     
bsu:BSU13400 ATP-dependent DNA ligase YkoU              K01971     611      478     0.322      276     
dsy:DSY0616 hypothetical protein                        K01971     818      468     0.339      280     
ret:RHE_PE00252 putative ATP-dependent DNA ligase prote K01971     882      465     0.344      262     
scl:sce3523 unnamed protein product; High confidence in K01971     762      463     0.353      255     
sno:Snov_0819 DNA ligase D                              K01971     842      462     0.339      254     
psb:Psyr_3245 ATP-dependent DNA ligase LigD phosphoeste K01971     866      462     0.323      254     
swi:Swit_3982 DNA ligase D                              K01971     837      461     0.306      271     
ppu:PP_3260 DNA ligase D                                K01971     833      459     0.350      246     
azc:AZC_1006 ATP-dependent DNA ligase                   K01971     900      458     0.330      297     
cpy:Cphy_1729 DNA ligase D                              K01971     813      458     0.317      278     
nar:Saro_1695 ATP-dependent DNA ligase LigD phosphoeste K01971     843      457     0.304      286     
rle:pRL120229 putative DNA ligase family protein        K01971     881      456     0.343      268     
rpa:TX73_018915 DNA ligase D                            K01971     914      454     0.335      266     
bja:bll6773 ORF_ID:bll6773; probable DNA ligase         K01971     892      451     0.340      268     
mlo:mll9625 ATP-dependent DNA ligase                    K01971     883      448     0.338      269     
sjp:SJA_C1-12900 ATP-dependent DNA ligase               K01971     829      445     0.312      266     
pst:PSPTO_3464 DNA ligase, ATP-dependent, putative      K01971     851      438     0.315      254     
ssy:SLG_04290 putative DNA ligase                       K01971     835      436     0.309      243     
atu:Atu5055 ATP-dependent DNA ligase                    K01971     884      434     0.325      268     
pde:Pden_4186 conserved hypothetical protein            K01971     330      428     0.313      243     
pae:PA2138 multifunctional non-homologous end joining p K01971     840      415     0.332      253     
ksk:KSE_05320 hypothetical protein                      K01971     173      230     0.320      169     
pti:PHATRDRAFT_37283 hypothetical protein                         1033      129     0.257      218     
cro:ROD_22631 putative N-hydroxybenzoate hydroxylase    K22270     397      127     0.257      257     
sly:138338352 uncharacterized protein                              207      124     0.299      117     
rso:RSc2806 putative amidase protein                    K03806     200      118     0.251      167     
vg:55623439 Gordonia phage OhMyWard; hypothetical prote            223      111     0.406      64      
pmur:107286054 vomeronasal type-2 receptor 26-like      K04613    1202      110     0.273      176     
oas:101121541 C-Maf-inducing protein isoform X1                    772      109     0.239      134     
mmu:394434 UDP-glucuronosyltransferase 1A9 precursor    K00699     528      108     0.244      275     
mtr:120575717 probable disease resistance protein At5g6            805      107     0.234      171     
cel:CELE_Y42A5A.4 Cyclin-dependent kinase-like 1        K08824     353      107     0.288      111     
tva:75637443 protein of unknown function, DUF4106 famil            273      105     0.272      114     
xla:108699251 bcl-2-modifying factor isoform X1         K17460     204      103     0.238      101     
mmp:MMP0162 conserved hypothetical protein              K09729     214      102     0.260      154     
ptex:113446632 embigin isoform X1                       K28348     345       95     0.206      155     
amj:102574274 eukaryotic translation initiation factor  K15028     229       94     0.231      199     
pmr:PMI2373 putative DNA-binding protein                           251       94     0.309      94      
fvr:FVEG_15625 hypothetical protein                                127       92     0.265      98      
cac:CA_C2184 Uncharacterized protein, homolog HI1244 fr            305       90     0.235      204     
bbu:BB_G07 borrelia family of unknown function                     190       87     0.259      81      

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