KEGG   PATHWAY: bacu04350
Entry
bacu04350                   Pathway                                
Name
TGF-beta signaling pathway - Balaenoptera acutorostrata scammoni (minke whale)
Description
The transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species ranging from worms and insects to mammals. A wide spectrum of cellular functions such as proliferation, apoptosis, differentiation and migration are regulated by TGF-beta family members. TGF-beta family member binds to the Type II receptor and recruits Type I, whereby Type II receptor phosphorylates and activates Type I. The Type I receptor, in turn, phosphorylates receptor-activated Smads ( R-Smads: Smad1, Smad2, Smad3, Smad5, and Smad8). Once phosphorylated, R-Smads associate with the co-mediator Smad, Smad4, and the heteromeric complex then translocates into the nucleus. In the nucleus, Smad complexes activate specific genes through cooperative interactions with other DNA-binding and coactivator (or co-repressor) proteins.
Class
Environmental Information Processing; Signal transduction
Pathway map
bacu04350  TGF-beta signaling pathway
bacu04350

Other DBs
GO: 0007179
Organism
Balaenoptera acutorostrata scammoni (minke whale) [GN:bacu]
Gene
103000072  CHRD; chordin [KO:K04657]
103016038  NOG; noggin [KO:K04658]
102998779  NBL1; neuroblastoma 1, DAN family BMP antagonist [KO:K19558]
103003015  GREM1; gremlin 1, DAN family BMP antagonist [KO:K23318]
103019307  THBS1; thrombospondin 1 [KO:K16857]
103020810  DCN; decorin [KO:K04660]
103004726  FMOD; fibromodulin [KO:K08121]
103002500  left-right determination factor 2-like [KO:K04668]
103005758  LEFTY2; left-right determination factor 2 [KO:K04668]
103017427  FST; follistatin [KO:K04661]
103004284  BMP2; bone morphogenetic protein 2 [KO:K21283]
103010740  BMP4; bone morphogenetic protein 4 [KO:K04662]
103006553  BMP6; bone morphogenetic protein 6 [KO:K16620]
103006786  uncharacterized LOC103006786 [KO:K22687]
103015028  inhibitor of carbonic anhydrase-like [KO:K14736]
103003168  TF; transferrin [KO:K14736]
103017575  BMP5; bone morphogenetic protein 5 [KO:K04663]
103010700  BMP7; bone morphogenetic protein 7 [KO:K16621]
103015222  BMP8B; bone morphogenetic protein 8b [KO:K16622]
103000722  bone morphogenetic protein 8A-like [KO:K16622]
103020685  bone morphogenetic protein 8B-like [KO:K16622]
103014954  bone morphogenetic protein 8A-like [KO:K16622]
103019914  GDF5; growth differentiation factor 5 [KO:K04664]
103010802  GDF6; growth differentiation factor 6 [KO:K20012]
103004708  uncharacterized LOC103004708 [KO:K20013]
103010465  AMH; anti-Mullerian hormone [KO:K04665]
103020304  IFNG; interferon gamma [KO:K04687]
103005897  TNF; tumor necrosis factor [KO:K03156]
103013992  THSD4; thrombospondin type 1 domain containing 4 [KO:K23377]
103000226  FBN1; fibrillin 1 [KO:K06825]
103009669  LTBP1; latent transforming growth factor beta binding protein 1 [KO:K19559]
103002687  TGFB1; transforming growth factor beta 1 [KO:K13375]
103001453  TGFB2; transforming growth factor beta 2 [KO:K13376]
103001029  TGFB3; transforming growth factor beta 3 [KO:K13377]
103010892  INHBA; inhibin beta A subunit [KO:K04667]
103017641  INHBC; inhibin beta C subunit [KO:K22688]
103017929  INHBE; inhibin beta E subunit [KO:K22689]
103017205  NODAL; nodal growth differentiation factor [KO:K04666]
103004489  BMPR1A; bone morphogenetic protein receptor type 1A [KO:K04673] [EC:2.7.11.30]
103017850  BMPR1B; bone morphogenetic protein receptor type 1B [KO:K13578] [EC:2.7.11.30]
102998999  ACVR1; activin A receptor type 1 [KO:K04675] [EC:2.7.11.30]
103010629  BMPR2; bone morphogenetic protein receptor type 2 [KO:K04671] [EC:2.7.11.30]
103002388  ACVR2A; activin A receptor type 2A [KO:K04670] [EC:2.7.11.30]
103008848  HFE2; hemochromatosis type 2 (juvenile) [KO:K23100]
103012874  NEO1; neogenin 1 [KO:K06766]
103014642  HFE; hemochromatosis [KO:K26535]
103001037  TFR2; transferrin receptor 2 [KO:K23910]
103011795  TFRC; transferrin receptor [KO:K06503]
103018421  RGMA; repulsive guidance molecule family member a [KO:K23096]
103018577  RGMB; repulsive guidance molecule family member b [KO:K06847]
103010865  AMHR2; anti-Mullerian hormone receptor type 2 [KO:K04672] [EC:2.7.11.30]
102999446  TGFBR1; transforming growth factor beta receptor 1 [KO:K04674] [EC:2.7.11.30]
103005777  TGFBR2; transforming growth factor beta receptor 2 [KO:K04388] [EC:2.7.11.30]
103007709  EMP3; epithelial membrane protein 3 [KO:K26257]
103007002  LRRC32; leucine rich repeat containing 32 [KO:K26316]
103007731  NRROS; negative regulator of reactive oxygen species [KO:K26317]
103020048  ACVR1B; activin A receptor type 1B [KO:K13567] [EC:2.7.11.30]
103009284  ACVR2B; activin A receptor type 2B [KO:K13596] [EC:2.7.11.30]
102998447  ACVR1C; activin A receptor type 1C [KO:K13568] [EC:2.7.11.30]
103016615  IGSF1; immunoglobulin superfamily, member 1 [KO:K26168]
102997636  BAMBI; BMP and activin membrane bound inhibitor [KO:K10162]
103003162  SMAD1; SMAD family member 1 [KO:K04676]
103005779  SMAD5; SMAD family member 5 [KO:K16790]
103014066  mothers against decapentaplegic homolog 9-like [KO:K16791]
103005078  SMAD2; SMAD family member 2 [KO:K04500]
103019152  SMAD3; SMAD family member 3 [KO:K23605]
103014916  SMAD4; SMAD family member 4 [KO:K04501]
103016919  SMAD6; SMAD family member 6 [KO:K04677]
103006574  SMAD7; SMAD family member 7 [KO:K19631]
103001429  SMURF1; SMAD specific E3 ubiquitin protein ligase 1 [KO:K04678] [EC:2.3.2.26]
102997712  SMURF2; SMAD specific E3 ubiquitin protein ligase 2 [KO:K04678] [EC:2.3.2.26]
103013087  ZFYVE9; zinc finger FYVE-type containing 9 [KO:K04679]
103020973  ZFYVE16; zinc finger FYVE-type containing 16 [KO:K04679]
102998295  RBX1; ring-box 1 [KO:K03868] [EC:2.3.2.32]
103011656  CUL1; cullin 1 [KO:K03347]
103011520  S-phase kinase-associated protein 1-like [KO:K03094]
103018727  SKP1; S-phase kinase associated protein 1 [KO:K03094]
102999619  MAPK1; mitogen-activated protein kinase 1 [KO:K04371] [EC:2.7.11.24]
103002590  MAPK3; mitogen-activated protein kinase 3 [KO:K04371] [EC:2.7.11.24]
103019793  RHOA; ras homolog family member A [KO:K04513]
103002971  rho-associated protein kinase 1-like [KO:K04514] [EC:2.7.11.1]
103019457  PPP2R1B; protein phosphatase 2 scaffold subunit Abeta [KO:K03456]
103017366  serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like [KO:K03456]
103018989  PPP2CA; protein phosphatase 2 catalytic subunit alpha [KO:K04382] [EC:3.1.3.16]
103000342  PPP2CB; protein phosphatase 2 catalytic subunit beta [KO:K04382] [EC:3.1.3.16]
103019215  serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform-like [KO:K04382] [EC:3.1.3.16]
103019799  RPS6KB1; ribosomal protein S6 kinase B1 [KO:K04688] [EC:2.7.11.1]
102998750  RPS6KB2; ribosomal protein S6 kinase B2 [KO:K04688] [EC:2.7.11.1]
103008943  HAMP; hepcidin antimicrobial peptide [KO:K23106]
103019726  ID1; inhibitor of DNA binding 1, HLH protein [KO:K04680]
103007840  ID2; inhibitor of DNA binding 2, HLH protein [KO:K17693]
103015738  ID3; inhibitor of DNA binding 3, HLH protein [KO:K17694]
103004661  RBL1; RB transcriptional corepressor like 1 [KO:K04681]
103003397  E2F4; E2F transcription factor 4 [KO:K04682]
103014275  E2F5; E2F transcription factor 5 [KO:K04682]
103001105  TFDP1; transcription factor Dp-1 [KO:K04683]
103016523  CREBBP; CREB binding protein [KO:K04498] [EC:2.3.1.48]
103000044  EP300; E1A binding protein p300 [KO:K04498] [EC:2.3.1.48]
103010578  SP1; Sp1 transcription factor [KO:K04684]
103002835  SKIL; SKI like proto-oncogene [KO:K18499]
103002494  SKI; SKI proto-oncogene [KO:K26503]
102999088  SIN3A; SIN3 transcription regulator family member A [KO:K11644]
103015711  HDAC2; histone deacetylase 2 [KO:K06067] [EC:3.5.1.98]
103000794  probable histone deacetylase 1-B-like [KO:K06067] [EC:3.5.1.98]
102998477  HDAC1; histone deacetylase 1 [KO:K06067] [EC:3.5.1.98]
102997482  NCOR1; nuclear receptor corepressor 1 [KO:K04650]
103011304  homeobox protein TGIF1-like [KO:K19383]
103009190  TGIF2; TGFB induced factor homeobox 2 [KO:K19553]
103016933  MYC; v-myc avian myelocytomatosis viral oncogene homolog [KO:K04377]
103011925  CDKN2B; cyclin dependent kinase inhibitor 2B [KO:K04685]
103007619  PITX2; paired like homeodomain 2 [KO:K04686]
Compound
C14819  Fe3+
Reference
  Authors
Shi Y, Massague J.
  Title
Mechanisms of TGF-beta signaling from cell membrane to the nucleus.
  Journal
Cell 113:685-700 (2003)
DOI:10.1016/S0092-8674(03)00432-X
Reference
  Authors
Derynck R, Zhang YE.
  Title
Smad-dependent and Smad-independent pathways in TGF-beta family signalling.
  Journal
Nature 425:577-84 (2003)
DOI:10.1038/nature02006
Reference
  Authors
Massague J.
  Title
How cells read TGF-beta signals.
  Journal
Nat Rev Mol Cell Biol 1:169-78 (2000)
DOI:10.1038/35043051
Reference
  Authors
Siegel PM, Massague J.
  Title
Cytostatic and apoptotic actions of TGF-beta in homeostasis and cancer.
  Journal
Nat Rev Cancer 3:807-21 (2003)
DOI:10.1038/nrc1208
Reference
  Authors
Shimasaki S, Moore RK, Otsuka F, Erickson GF.
  Title
The bone morphogenetic protein system in mammalian reproduction.
  Journal
Endocr Rev 25:72-101 (2004)
DOI:10.1210/er.2003-0007
Reference
  Authors
De Robertis EM, Larrain J, Oelgeschlager M, Wessely O.
  Title
The establishment of Spemann's organizer and patterning of the vertebrate embryo.
  Journal
Nat Rev Genet 1:171-81 (2000)
DOI:10.1038/35042039
Reference
  Authors
Gumienny TL, Padgett RW.
  Title
The other side of TGF-beta superfamily signal regulation: thinking outside the cell.
  Journal
Trends Endocrinol Metab 13:295-9 (2002)
DOI:10.1016/S1043-2760(02)00615-X
Reference
  Authors
Hamada H, Meno C, Watanabe D, Saijoh Y.
  Title
Establishment of vertebrate left-right asymmetry.
  Journal
Nat Rev Genet 3:103-13 (2002)
DOI:10.1038/nrg732
Reference
  Authors
Chang H, Brown CW, Matzuk MM.
  Title
Genetic analysis of the mammalian transforming growth factor-beta superfamily.
  Journal
Endocr Rev 23:787-823 (2002)
DOI:10.1210/er.2002-0003
Reference
  Authors
Morita K, Chow KL, Ueno N.
  Title
Regulation of body length and male tail ray pattern formation of Caenorhabditis elegans by a member of TGF-beta family.
  Journal
Development 126:1337-47 (1999)
Reference
PMID:9847239
  Authors
Krishna S, Maduzia LL, Padgett RW.
  Title
Specificity of TGFbeta signaling is conferred by distinct type I receptors and their associated SMAD proteins in Caenorhabditis elegans.
  Journal
Development 126:251-60 (1999)
Reference
  Authors
Chen Y, Mironova E, Whitaker LL, Edwards L, Yost HJ, Ramsdell AF.
  Title
ALK4 functions as a receptor for multiple TGF beta-related ligands to regulate left-right axis determination and mesoderm induction in Xenopus.
  Journal
Dev Biol 268:280-94 (2004)
DOI:10.1016/j.ydbio.2003.12.035
Reference
  Authors
Onichtchouk D, Chen YG, Dosch R, Gawantka V, Delius H, Massague J, Niehrs C
  Title
Silencing of TGF-beta signalling by the pseudoreceptor BAMBI.
  Journal
Nature 401:480-5 (1999)
DOI:10.1038/46794
Reference
  Authors
Yan X, Lin Z, Chen F, Zhao X, Chen H, Ning Y, Chen YG
  Title
Human BAMBI cooperates with Smad7 to inhibit transforming growth factor-beta signaling.
  Journal
J Biol Chem 284:30097-104 (2009)
DOI:10.1074/jbc.M109.049304
Reference
PMID:8093006
  Authors
Hildebrand A, Romaris M, Rasmussen LM, Heinegard D, Twardzik DR, Border WA, Ruoslahti E
  Title
Interaction of the small interstitial proteoglycans biglycan, decorin and fibromodulin with transforming growth factor beta.
  Journal
Biochem J 302 ( Pt 2):527-34 (1994)
DOI:10.1042/bj3020527
Reference
  Authors
Soo C, Hu FY, Zhang X, Wang Y, Beanes SR, Lorenz HP, Hedrick MH, Mackool RJ, Plaas A, Kim SJ, Longaker MT, Freymiller E, Ting K
  Title
Differential expression of fibromodulin, a transforming growth factor-beta modulator, in fetal skin development and scarless repair.
  Journal
Am J Pathol 157:423-33 (2000)
DOI:10.1016/s0002-9440(10)64555-5
Reference
  Authors
Anderson GJ, Frazer DM
  Title
Iron metabolism meets signal transduction.
  Journal
Nat Genet 38:503-4 (2006)
DOI:10.1038/ng0506-503
Reference
  Authors
Canali S, Core AB, Zumbrennen-Bullough KB, Merkulova M, Wang CY, Schneyer AL, Pietrangelo A, Babitt JL
  Title
Activin B Induces Noncanonical SMAD1/5/8 Signaling via BMP Type I Receptors in Hepatocytes: Evidence for a Role in Hepcidin Induction by Inflammation in Male Mice.
  Journal
Endocrinology 157:1146-62 (2016)
DOI:10.1210/en.2015-1747
Reference
  Authors
Ganz T, Nemeth E
  Title
Iron homeostasis in host defence and inflammation.
  Journal
Nat Rev Immunol 15:500-10 (2015)
DOI:10.1038/nri3863
Reference
  Authors
Babitt JL, Zhang Y, Samad TA, Xia Y, Tang J, Campagna JA, Schneyer AL, Woolf CJ, Lin HY
  Title
Repulsive guidance molecule (RGMa), a DRAGON homologue, is a bone morphogenetic protein co-receptor.
  Journal
J Biol Chem 280:29820-7 (2005)
DOI:10.1074/jbc.M503511200
Reference
  Authors
Samad TA, Rebbapragada A, Bell E, Zhang Y, Sidis Y, Jeong SJ, Campagna JA, Perusini S, Fabrizio DA, Schneyer AL, Lin HY, Brivanlou AH, Attisano L, Woolf CJ
  Title
DRAGON, a bone morphogenetic protein co-receptor.
  Journal
J Biol Chem 280:14122-9 (2005)
DOI:10.1074/jbc.M410034200
Reference
  Authors
Vogt AS, Arsiwala T, Mohsen M, Vogel M, Manolova V, Bachmann MF
  Title
On Iron Metabolism and Its Regulation.
  Journal
Int J Mol Sci 22:ijms22094591 (2021)
DOI:10.3390/ijms22094591
Reference
  Authors
Ikushima H, Miyazono K
  Title
TGFbeta signalling: a complex web in cancer progression.
  Journal
Nat Rev Cancer 10:415-24 (2010)
DOI:10.1038/nrc2853
Related
pathway
bacu04010  MAPK signaling pathway
bacu04110  Cell cycle
bacu04120  Ubiquitin mediated proteolysis
bacu04210  Apoptosis
KO pathway
ko04350   
LinkDB

DBGET integrated database retrieval system