KEGG   PATHWAY: acat04120
Entry
acat04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Aquarana catesbeiana (American bullfrog)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
acat04120  Ubiquitin mediated proteolysis
acat04120

Other DBs
GO: 0016567
Organism
Aquarana catesbeiana (American bullfrog) [GN:acat]
Gene
141102760  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
141103052  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
141103312  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
141103616  COP1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
141103813  UBE2U; ubiquitin-conjugating enzyme E2 U isoform X1 [KO:K10584] [EC:2.3.2.23]
141103862  CDC20; LOW QUALITY PROTEIN: cell division cycle protein 20 homolog [KO:K03363]
141104102  CDC34; ubiquitin-conjugating enzyme E2 R1 isoform X1 [KO:K02207] [EC:2.3.2.23]
141105255  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
141105402  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
141105785  [KO:K10456]
141105861  UBA52; ubiquitin-ribosomal protein eL40 fusion protein [KO:K02927]
141105944  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
141105985  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
141106010  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
141106061  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
141106119  ANAPC16; anaphase-promoting complex subunit 16 isoform X1 [KO:K25229]
141106302  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
141106881  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
141107146  ELOB; elongin-B [KO:K03873]
141107933  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
141108002  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
141108088  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
141108139  XIAP; E3 ubiquitin-protein ligase XIAP isoform X1 [KO:K04725] [EC:2.3.2.27]
141108149  CUL4B; cullin-4B [KO:K10609]
141108295  UBA1; ubiquitin-like modifier-activating enzyme 1 isoform X1 [KO:K03178] [EC:6.2.1.45]
141108333  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
141108361  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
141108368  [KO:K10447]
141108541  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
141108731  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
141108953  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
141109318  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
141110363  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
141110734  [KO:K04696]
141110824  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
141110827  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
141110860  CBL; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
141110888  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
141111017  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
141111151  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
141111279  [KO:K10099]
141111342  UBE4B; ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
141111950  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
141112071  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
141112119  DDB1; LOW QUALITY PROTEIN: DNA damage-binding protein 1 [KO:K10610]
141112232  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
141112339  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
141112359  ERCC8; DNA excision repair protein ERCC-8 [KO:K10570]
141112678  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
141112808  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
141113219  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
141113268  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
141113313  ITCH; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
141113505  [KO:K16061]
141113546  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
141113672  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
141113835  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
141114028  [KO:K16061]
141114127  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
141114398  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
141114582  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
141116381  UBE2K; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
141116678  PIAS3; LOW QUALITY PROTEIN: E3 SUMO-protein ligase PIAS3 [KO:K16064] [EC:2.3.2.-]
141120593  UBOX5; RING finger protein 37 [KO:K10600] [EC:2.3.2.27]
141126976  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
141127238  CUL5; LOW QUALITY PROTEIN: cullin-5 [KO:K10612]
141127770  CUL4A; cullin-4A [KO:K10609]
141127818  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
141127834  UBE3A; ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
141127873  CDC16; cell division cycle protein 16 homolog [KO:K03353]
141127980  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
141128017  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
141128092  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
141128815  MID1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
141129103  [KO:K08770]
141129104  UBB; polyubiquitin-B [KO:K08770]
141129314  [KO:K07868]
141131219  PIAS1; LOW QUALITY PROTEIN: E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
141131280  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
141131307  DET1; DET1 homolog isoform X1 [KO:K10571]
141131471  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
141131541  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
141131634  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
141131667  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
141131737  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
141132073  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
141132122  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
141132211  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
141132236  CDC23; cell division cycle protein 23 homolog isoform X1 [KO:K03355]
141132403  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
141132422  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
141132424  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
141132609  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
141132861  FBXO4; F-box only protein 4 [KO:K10291]
141133072  UBE2D4; ubiquitin-conjugating enzyme E2 D4 [KO:K06689] [EC:2.3.2.23]
141133133  RHOBTB2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
141133292  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
141133496  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
141139485  RNF7; RING-box protein 2 [KO:K10611]
141139493  TRIP12; E3 ubiquitin-protein ligase TRIP12 [KO:K10590] [EC:2.3.2.26]
141139508  [KO:K10603]
141139546  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
141139626  CUL3; cullin-3 [KO:K03869]
141139880  ANAPC7; anaphase-promoting complex subunit 7 [KO:K03354]
141139890  [KO:K10575] [EC:2.3.2.23]
141139962  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
141140109  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
141140490  BIRC6; dual E2 ubiquitin-conjugating enzyme/E3 ubiquitin-protein ligase BIRC6 isoform X1 [KO:K10586] [EC:2.3.2.23]
141140547  UBC; polyubiquitin-C [KO:K08770]
141140651  ANAPC1; anaphase-promoting complex subunit 1 [KO:K03348]
141140689  FANCL; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
141140979  RPS27A; ubiquitin-ribosomal protein eS31 fusion protein [KO:K02977]
141141322  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
141141427  UBE2L3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
141144281  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
141144320  CUL2; cullin-2 [KO:K03870]
141144343  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
141144491  [KO:K20217] [EC:2.3.2.23]
141144493  [KO:K20217] [EC:2.3.2.23]
141144601  CUL1; cullin-1 isoform X1 [KO:K03347]
141144805  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
141144962  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
141145270  UBE2W; ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
141145271  ELOC; elongin-C [KO:K03872]
141145329  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
141145420  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
141146832  UBE2G2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
141146868  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
141146939  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
141147707  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
141148627  MGRN1; E3 ubiquitin-protein ligase MGRN1 [KO:K10604] [EC:2.3.2.27]
141148653  STUB1; E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
141148915  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
acat03050  Proteasome
KO pathway
ko04120   

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