KEGG   PATHWAY: achc04120
Entry
achc04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Aquila chrysaetos chrysaetos (golden eagle)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
achc04120  Ubiquitin mediated proteolysis
achc04120

Other DBs
GO: 0016567
Organism
Aquila chrysaetos chrysaetos (golden eagle) [GN:achc]
Gene
115333361  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K03178] [EC:6.2.1.45]
115333467  CUL4B; LOW QUALITY PROTEIN: cullin-4B [KO:K10609]
115333490  UBE2A; ubiquitin-conjugating enzyme E2 A isoform X2 [KO:K10573] [EC:2.3.2.23]
115333621  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
115333630  [KO:K04725] [EC:2.3.2.27]
115334013  CDC23; cell division cycle protein 23 homolog isoform X1 [KO:K03355]
115334091  SKP1; S-phase kinase-associated protein 1 isoform X1 [KO:K03094]
115334093  UBE2B; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
115334114  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
115334295  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
115334322  UBE2D2; ubiquitin-conjugating enzyme E2 D2 isoform X2 [KO:K06689] [EC:2.3.2.23]
115334571  MID1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
115334578  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
115334634  CDC16; cell division cycle protein 16 homolog [KO:K03353]
115334727  CUL4A; cullin-4A [KO:K10609]
115334739  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
115334941  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
115334970  TRIM32; E3 ubiquitin-protein ligase TRIM32 isoform X4 [KO:K10607] [EC:2.3.2.27]
115335353  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
115335532  UBE2I; SUMO-conjugating enzyme UBC9 isoform X2 [KO:K10577]
115335701  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X5 [KO:K04678] [EC:2.3.2.26]
115335727  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
115335742  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
115335955  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
115336116  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
115336119  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
115336734  UBE2J1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
115336915  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X2 [KO:K04416] [EC:2.7.11.25]
115336928  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
115337042  FBXO4; F-box only protein 4 [KO:K10291]
115337092  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
115337183  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
115337265  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
115337464  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
115337665  [KO:K10684] [EC:6.2.1.45]
115337670  [KO:K10684] [EC:6.2.1.45]
115337812  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
115338085  [KO:K07868]
115338224  [KO:K10592] [EC:2.3.2.26]
115338338  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X2 [KO:K10601] [EC:2.3.2.27]
115338389  KEAP1; LOW QUALITY PROTEIN: kelch-like ECH-associated protein 1 [KO:K10456]
115338545  [KO:K03178] [EC:6.2.1.45]
115339215  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X2 [KO:K05632] [EC:2.3.2.26]
115339223  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
115339346  CUL1; cullin-1 [KO:K03347]
115339353  CUL2; cullin-2 isoform X1 [KO:K03870]
115339384  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
115339676  BIRC7; baculoviral IAP repeat-containing protein 7 isoform X1 [KO:K16061]
115339732  [KO:K20217] [EC:2.3.2.23]
115339781  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
115339998  [KO:K20217] [EC:2.3.2.23]
115340060  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
115340068  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
115340104  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
115340155  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X9 [KO:K10593] [EC:2.3.2.26]
115340233  ELOC; elongin-C [KO:K03872]
115340317  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
115340959  UBE2O; LOW QUALITY PROTEIN: (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
115340981  UBOX5; RING finger protein 37 isoform X2 [KO:K10600]
115341005  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
115341053  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
115341086  PML; protein PML [KO:K10054] [EC:2.3.2.-]
115341105  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
115341183  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
115341340  DET1; DET1 homolog isoform X1 [KO:K10571]
115341348  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X7 [KO:K10594] [EC:2.3.2.26]
115341435  SMURF2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
115341515  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
115341571  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
115341594  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
115342201  [KO:K10054] [EC:2.3.2.-]
115342713  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X3 [KO:K10687] [EC:2.3.2.34]
115342787  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
115342897  FBXO2; F-box only protein 2 [KO:K10099]
115342982  UBE2J2; ubiquitin-conjugating enzyme E2 J2 isoform X1 [KO:K04554] [EC:2.3.2.23]
115343077  UBE2E3; ubiquitin-conjugating enzyme E2 E3 isoform X1 [KO:K20217] [EC:2.3.2.23]
115343815  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
115344214  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
115344343  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
115344507  FANCL; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
115344548  PRKN; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
115344564  CBL; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
115344734  ANAPC1; anaphase-promoting complex subunit 1 isoform X3 [KO:K03348]
115344883  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
115344989  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
115345127  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
115345421  ANAPC5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
115345529  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 isoform X2 [KO:K10598] [EC:5.2.1.8]
115345611  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
115345617  FBXW8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
115345837  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
115345929  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
115346102  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
115346339  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
115346411  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
115346431  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
115346635  ANAPC10; anaphase-promoting complex subunit 10 [KO:K03357]
115346651  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
115346868  UBC; polyubiquitin-C isoform X1 [KO:K08770]
115346911  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
115346980  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
115346991  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
115347050  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
115347119  UBE2G1; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
115347583  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
115347707  CUL3; cullin-3 [KO:K03869]
115347725  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
115347755  [KO:K10603]
115347965  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
115347994  BTRC; F-box/WD repeat-containing protein 1A isoform X4 [KO:K03362]
115348004  ANAPC16; anaphase-promoting complex subunit 16 isoform X1 [KO:K25229]
115348036  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
115348329  ELOB; LOW QUALITY PROTEIN: elongin-B [KO:K03873]
115348420  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
115348560  HERC3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
115349044  COP1; E3 ubiquitin-protein ligase COP1 isoform X4 [KO:K10143] [EC:2.3.2.27]
115349091  FZR1; fizzy-related protein homolog isoform X2 [KO:K03364]
115349100  CDC20; cell division cycle protein 20 homolog isoform X2 [KO:K03363]
115349293  PIAS4; E3 SUMO-protein ligase PIAS4 isoform X1 [KO:K16065] [EC:2.3.2.27]
115349446  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
115349619  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
115350095  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X6 [KO:K10586] [EC:2.3.2.23]
115350116  RHOBTB2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
115351560  DDB1; DNA damage-binding protein 1 [KO:K10610]
115352054  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
115352685  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
115352966  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
115353174  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 isoform X1 [KO:K10582] [EC:2.3.2.23]
115353209  [KO:K16060]
115353220  RRP8; ribosomal RNA-processing protein 8 isoform X3 [KO:K10260]
115353250  CUL5; cullin-5 isoform X1 [KO:K10612]
115353383  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
115353525  ANAPC15; anaphase-promoting complex subunit 15 [KO:K25228]
115353861  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
115353896  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
121232389  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
121232879  [KO:K02207] [EC:2.3.2.23]
121232898  [KO:K04416] [EC:2.7.11.25]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
achc03050  Proteasome
KO pathway
ko04120   

DBGET integrated database retrieval system