KEGG   PATHWAY: egr03420
Entry
egr03420                    Pathway                                
Name
Nucleotide excision repair - Eucalyptus grandis (rose gum)
Description
Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
Class
Genetic Information Processing; Replication and repair
Pathway map
egr03420  Nucleotide excision repair
egr03420

Other DBs
GO: 0006289
Organism
Eucalyptus grandis (rose gum) [GN:egr]
Gene
104414271  [KO:K03017]
104414823  [KO:K06634]
104415536  [KO:K10849]
104415814  [KO:K10610]
104417305  [KO:K10756]
104417802  [KO:K10610]
104418096  [KO:K02327] [EC:2.7.7.7]
104418196  [KO:K03012]
104418231  [KO:K03505]
104419285  [KO:K10846]
104420611  [KO:K07466]
104421226  [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
104421263  [KO:K03012]
104421306  [KO:K02326] [EC:2.7.7.7]
104421373  [KO:K10754]
104421682  [KO:K03142]
104422047  [KO:K03141]
104422418  [KO:K04802]
104423249  [KO:K10839]
104423845  [KO:K03015]
104425366  [KO:K03013]
104425494  [KO:K02328]
104425632  [KO:K10740]
104425813  [KO:K02202] [EC:2.7.11.22 2.7.11.23]
104425878  [KO:K03009]
104426565  [KO:K10841]
104426669  [KO:K10844] [EC:5.6.2.3]
104429702  [KO:K10842]
104432304  [KO:K06634]
104432651  [KO:K10140]
104434005  [KO:K02324] [EC:2.7.7.7]
104436408  [KO:K03868] [EC:2.3.2.32]
104436751  [KO:K03013]
104437239  [KO:K10739]
104437304  [KO:K03013]
104437402  [KO:K10739]
104437993  [KO:K03868] [EC:2.3.2.32]
104438150  [KO:K07466]
104439002  [KO:K03868] [EC:2.3.2.32]
104439661  [KO:K03007]
104440336  [KO:K03013]
104441370  [KO:K23720]
104441792  [KO:K10755]
104442349  [KO:K07466]
104443285  [KO:K10756]
104443617  [KO:K10848] [EC:3.1.-.-]
104443736  [KO:K10845]
104443830  [KO:K10843] [EC:5.6.2.4]
104444840  [KO:K10609]
104445264  [KO:K03016]
104445284  [KO:K03010] [EC:2.7.7.6]
104445290  [KO:K03144]
104447788  [KO:K10570]
104448335  [KO:K02335] [EC:2.7.7.7]
104448554  [KO:K03504]
104448757  [KO:K03006] [EC:2.7.7.6]
104449714  [KO:K10838]
104450918  [KO:K10755]
104450925  [KO:K10756]
104451548  [KO:K03504]
104452609  [KO:K03012]
104453007  [KO:K03143]
104453152  [KO:K03011]
104454646  [KO:K03008]
104456272  [KO:K03014]
104456397  [KO:K02325] [EC:2.7.7.7]
120285977  [KO:K06634]
120292685  [KO:K03012]
120293337  [KO:K03010] [EC:2.7.7.6]
120295350  [KO:K03013]
Reference
  Authors
Sugasawa K.
  Title
[Molecular mechanism of mammalian nucleotide excision repair]
  Journal
Tanpakushitsu Kakusan Koso 46:893-901 (2001)
Reference
  Authors
Nakatsu Y.
  Title
[Transcription-coupled repair and Cockayne syndrome]
  Journal
Tanpakushitsu Kakusan Koso 46:908-15 (2001)
Reference
  Authors
Nakagawa N, Masui R, Kuramitsu S.
  Title
[Structure and function of DNA repair enzyme UvrB from Thermus thermophilus HB8]
  Journal
Tanpakushitsu Kakusan Koso 46:968-75 (2001)
Reference
  Authors
Kraemer KH, Patronas NJ, Schiffmann R, Brooks BP, Tamura D, DiGiovanna JJ.
  Title
Xeroderma pigmentosum, trichothiodystrophy and Cockayne syndrome: a complex genotype-phenotype relationship.
  Journal
Neuroscience 145:1388-96 (2007)
DOI:10.1016/j.neuroscience.2006.12.020
Reference
  Authors
Saldivar JS, Wu X, Follen M, Gershenson D.
  Title
Nucleotide excision repair pathway review I: implications in ovarian cancer and platinum sensitivity.
  Journal
Gynecol Oncol 107:S56-71 (2007)
DOI:10.1016/j.ygyno.2007.07.043
Reference
  Authors
Sugasawa K.
  Title
[DNA repair pathways involving Cul4A ubiquitin ligases]
  Journal
Tanpakushitsu Kakusan Koso 51:1339-44 (2006)
Reference
  Authors
Ito S, Ando D, Tanaka K.
  Title
[Cross-talk between DNA repair and transcription: molecular mechanism and disorders]
  Journal
Tanpakushitsu Kakusan Koso 52:1823-31 (2007)
Related
pathway
egr03020  RNA polymerase
egr04120  Ubiquitin mediated proteolysis
KO pathway
ko03420   

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