KEGG   PATHWAY: kqu00270
Entry
kqu00270                    Pathway                                
Name
Cysteine and methionine metabolism - Klebsiella quasipneumoniae
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
kqu00270  Cysteine and methionine metabolism
kqu00270

Module
kqu_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:kqu00270]
kqu_M00021  Cysteine biosynthesis, serine => cysteine [PATH:kqu00270]
kqu_M00034  Methionine salvage pathway [PATH:kqu00270]
kqu_M00035  Methionine degradation [PATH:kqu00270]
kqu_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:kqu00270]
Other DBs
GO: 0006534 0006555
Organism
Klebsiella quasipneumoniae [GN:kqu]
Gene
AVR78_03670  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
AVR78_23380  cysteine synthase A [KO:K01738] [EC:2.5.1.47]
AVR78_10415  cysteine synthase [KO:K01738] [EC:2.5.1.47]
AVR78_00915  cystathionine beta-lyase [KO:K01758] [EC:4.4.1.1]
AVR78_00995  cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]
AVR78_16650  transcriptional regulator [KO:K14155] [EC:4.4.1.13]
AVR78_00910  cystathionine beta-synthase [KO:K01697] [EC:4.2.1.22]
AVR78_09910  homocysteine S-methyltransferase [KO:K00547] [EC:2.1.1.10]
AVR78_05865  methionine synthase [KO:K00548] [EC:2.1.1.13]
AVR78_19860  5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
AVR78_05480  5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase [KO:K00549] [EC:2.1.1.14]
AVR78_00765  methionine adenosyltransferase [KO:K00789] [EC:2.5.1.6]
AVR78_08860  S-adenosylmethionine decarboxylase [KO:K01611] [EC:4.1.1.50]
AVR78_08865  spermidine synthase [KO:K00797] [EC:2.5.1.16]
AVR78_09120  5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [KO:K01243] [EC:3.2.2.9]
AVR78_11795  S-methyl-5-thioribose kinase [KO:K00899] [EC:2.7.1.100]
AVR78_19655  hypothetical protein [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
AVR78_24160  hypothetical protein [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
AVR78_11800  S-methyl-5-thioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
AVR78_11840  methylthioribulose-1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]
AVR78_11890  2,3-diketo-5-methylthio-1-phosphopentane phosphatase [KO:K09880] [EC:3.1.3.77]
AVR78_11885  acireductone dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
AVR78_16180  aromatic amino acid aminotransferase [KO:K00832] [EC:2.6.1.57]
AVR78_06080  aromatic amino acid aminotransferase [KO:K00832] [EC:2.6.1.57]
AVR78_16160  aspartate aminotransferase [KO:K08969] [EC:2.6.1.117]
AVR78_20835  Free methionine-R-sulfoxide reductase [KO:K08968] [EC:1.8.4.14]
AVR78_21275  DNA (cytosine-5-)-methyltransferase [KO:K00558] [EC:2.1.1.37]
AVR78_21455  adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
AVR78_24875  S-ribosylhomocysteine lyase [KO:K07173] [EC:4.4.1.21]
AVR78_05925  lysine-sensitive aspartokinase 3 [KO:K00928] [EC:2.7.2.4]
AVR78_08210  bifunctional aspartate kinase/homoserine dehydrogenase I [KO:K12524] [EC:2.7.2.4 1.1.1.3]
AVR78_05030  bifunctional aspartate kinase/homoserine dehydrogenase II [KO:K12525] [EC:2.7.2.4 1.1.1.3]
AVR78_17810  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
AVR78_02840  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
AVR78_08215  homoserine kinase [KO:K00872] [EC:2.7.1.39]
AVR78_05840  homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
AVR78_05025  cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
AVR78_05195  branched chain amino acid aminotransferase [KO:K00826] [EC:2.6.1.42]
AVR78_24880  glutamate--cysteine ligase [KO:K01919] [EC:6.3.2.2]
AVR78_00790  glutathione synthase [KO:K01920] [EC:6.3.2.3]
AVR78_13600  aromatic amino acid aminotransferase [KO:K00813] [EC:2.6.1.1]
AVR78_23850  3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
AVR78_17285  L-lactate dehydrogenase [KO:K00016] [EC:1.1.1.27]
AVR78_00095  aspartate/glutamate racemase [KO:K25316] [EC:5.1.1.10]
AVR78_21220  D-cysteine desulfhydrase [KO:K05396] [EC:4.4.1.15]
AVR78_02055  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AVR78_20735  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
AVR78_25500  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
AVR78_23425  cysteine synthase B [KO:K12339] [EC:2.5.1.144]
AVR78_11850  dihydrofolate reductase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
AVR78_25025  3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
AVR78_00600  D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
AVR78_03140  hydroxyacid dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
AVR78_09635  oxidoreductase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
AVR78_13500  phosphoserine transaminase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01102  O-Phospho-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
kqu00010  Glycolysis / Gluconeogenesis
kqu00250  Alanine, aspartate and glutamate metabolism
kqu00260  Glycine, serine and threonine metabolism
kqu00290  Valine, leucine and isoleucine biosynthesis
kqu00430  Taurine and hypotaurine metabolism
kqu00480  Glutathione metabolism
kqu00620  Pyruvate metabolism
kqu00640  Propanoate metabolism
kqu00770  Pantothenate and CoA biosynthesis
kqu00900  Terpenoid backbone biosynthesis
kqu00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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