KEGG   PATHWAY: lsr03008
Entry
lsr03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Lonchura striata (white-rumped munia)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
lsr03008  Ribosome biogenesis in eukaryotes
lsr03008

Organism
Lonchura striata (white-rumped munia) [GN:lsr]
Gene
110467595  WDR36; WD repeat-containing protein 36 [KO:K14554]
110468025  GAR1; H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
110468618  BMS1; ribosome biogenesis protein BMS1 homolog [KO:K14569]
110468727  NOP56; nucleolar protein 56 [KO:K14564]
110468812  NOB1; RNA-binding protein NOB1 [KO:K11883]
110468819  UTP4; U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
110468861  HEATR1; HEAT repeat-containing protein 1 [KO:K14550]
110468988  CSNK2A1; casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
110469078  XPO1; exportin-1 isoform X1 [KO:K14290]
110469471  REXO1; RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
110469754  GTPBP4; nucleolar GTP-binding protein 1 [KO:K06943]
110470065  [KO:K01164] [EC:3.1.26.5]
110470421  REXO2; oligoribonuclease, mitochondrial [KO:K13288] [EC:3.1.-.-]
110470775  NHP2; H/ACA ribonucleoprotein complex subunit 2 [KO:K11129]
110471122  WDR75; WD repeat-containing protein 75 [KO:K14552]
110471130  SBDS; ribosome maturation protein SBDS [KO:K14574]
110471249  RCL1; RNA 3'-terminal phosphate cyclase-like protein isoform X1 [KO:K11108]
110471275  UTP15; U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
110472331  GNL3; guanine nucleotide-binding protein-like 3 isoform X1 [KO:K14538]
110472646  DKC1; H/ACA ribonucleoprotein complex subunit DKC1 [KO:K11131] [EC:5.4.99.-]
110472681  RIOK1; serine/threonine-protein kinase RIO1 [KO:K07178] [EC:2.7.11.1]
110472774  RPP40; ribonuclease P protein subunit p40 [KO:K14530] [EC:3.1.26.5]
110472821  WDR43; WD repeat-containing protein 43 [KO:K14546]
110473910  LSG1; large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
110473939  XRN1; 5'-3' exoribonuclease 1 isoform X1 [KO:K12618] [EC:3.1.13.-]
110474278  EFL1; elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
110474346  XRN2; 5'-3' exoribonuclease 2 [KO:K12619] [EC:3.1.13.-]
110474524  UTP6; U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
110475071  NOL6; nucleolar protein 6 [KO:K14544]
110475366  RPP30; ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
110475541  REXO5; RNA exonuclease 5 [KO:K14570] [EC:3.1.-.-]
110475691  PWP2; periodic tryptophan protein 2 homolog [KO:K14558]
110476207  POP4; ribonuclease P protein subunit p29 [KO:K03538] [EC:3.1.26.5]
110476334  CSNK2A2; casein kinase II subunit alpha' [KO:K03097] [EC:2.7.11.1]
110476614  NMD3; 60S ribosomal export protein NMD3 [KO:K07562]
110477222  FCF1; rRNA-processing protein FCF1 homolog [KO:K14566]
110477474  [KO:K01164] [EC:3.1.26.5]
110477846  RAN; GTP-binding nuclear protein Ran [KO:K07936]
110478688  MDN1; midasin [KO:K14572]
110478856  NXF1; nuclear RNA export factor 1 isoform X1 [KO:K14284]
110479207  EIF6; eukaryotic translation initiation factor 6 [KO:K03264]
110479746  RPP25; ribonuclease P protein subunit p25 [KO:K14525] [EC:3.1.26.5]
110479989  TBL3; transducin beta-like protein 3 [KO:K14555]
110480056  UTP14A; U3 small nucleolar RNA-associated protein 14 homolog A [KO:K14567]
110480118  NXT2; NTF2-related export protein 2 isoform X1 [KO:K14285]
110480569  GNL3L; guanine nucleotide-binding protein-like 3-like protein [KO:K14538]
110480738  WDR3; WD repeat-containing protein 3 isoform X1 [KO:K14556]
110480848  EMG1; ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
110481207  RIOK2; serine/threonine-protein kinase RIO2 [KO:K07179] [EC:2.7.11.1]
110481363  POP5; ribonuclease P/MRP protein subunit POP5 isoform X1 [KO:K03537] [EC:3.1.26.5]
110481727  [KO:K14561]
110481740  NOP10; H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
110482434  RPP38; ribonuclease P protein subunit p38 [KO:K14523] [EC:3.1.26.5]
110482516  AK6; adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
110482688  TCOF1; treacle protein isoform X1 [KO:K14562]
110482828  DROSHA; ribonuclease 3 [KO:K03685] [EC:3.1.26.3]
110483111  RRP7A; ribosomal RNA-processing protein 7 homolog A [KO:K14545]
110483117  SNU13; NHP2-like protein 1 [KO:K12845]
110483215  NVL; nuclear valosin-containing protein-like [KO:K14571]
110483937  [KO:K14559]
110484158  RPP25L; ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
110484241  GNL2; nucleolar GTP-binding protein 2 [KO:K14537]
110484367  SPATA5; ATPase family protein 2 homolog isoform X1 [KO:K14575]
110484581  NOP58; nucleolar protein 58 [KO:K14565]
110484699  UTP18; U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
110484922  NAT10; RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
116183443  IMP3; U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
116184317  [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
lsr03010  Ribosome
KO pathway
ko03008   

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