KEGG   PATHWAY: aly01100
Entry
aly01100                    Pathway                                
Name
Metabolic pathways - Arabidopsis lyrata (lyrate rockcress)
Class
Pathway map
aly01100  Metabolic pathways
aly01100

Module
aly_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:aly01100]
aly_M00002  Glycolysis, core module involving three-carbon compounds [PATH:aly01100]
aly_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aly01100]
aly_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:aly01100]
aly_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:aly01100]
aly_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:aly01100]
aly_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:aly01100]
aly_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aly01100]
aly_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aly01100]
aly_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aly01100]
aly_M00012  Glyoxylate cycle [PATH:aly01100]
aly_M00015  Proline biosynthesis, glutamate => proline [PATH:aly01100]
aly_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:aly01100]
aly_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:aly01100]
aly_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:aly01100]
aly_M00021  Cysteine biosynthesis, serine => cysteine [PATH:aly01100]
aly_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:aly01100]
aly_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:aly01100]
aly_M00026  Histidine biosynthesis, PRPP => histidine [PATH:aly01100]
aly_M00027  GABA (gamma-Aminobutyrate) shunt [PATH:aly01100]
aly_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:aly01100]
aly_M00034  Methionine salvage pathway [PATH:aly01100]
aly_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:aly01100]
aly_M00039  Monolignol biosynthesis, phenylalanine/tyrosine => monolignol [PATH:aly01100]
aly_M00040  Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:aly01100]
aly_M00044  Tyrosine degradation, tyrosine => homogentisate [PATH:aly01100]
aly_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:aly01100]
aly_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:aly01100]
aly_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:aly01100]
aly_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:aly01100]
aly_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:aly01100]
aly_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:aly01100]
aly_M00055  N-glycan precursor biosynthesis [PATH:aly01100]
aly_M00073  N-glycan precursor trimming [PATH:aly01100]
aly_M00081  Pectin degradation [PATH:aly01100]
aly_M00082  Fatty acid biosynthesis, initiation [PATH:aly01100]
aly_M00083  Fatty acid biosynthesis, elongation [PATH:aly01100]
aly_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:aly01100]
aly_M00087  beta-Oxidation [PATH:aly01100]
aly_M00089  Triacylglycerol biosynthesis [PATH:aly01100]
aly_M00092  Phosphatidylethanolamine (PE) biosynthesis, ethanolamine => PE [PATH:aly01100]
aly_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:aly01100]
aly_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:aly01100]
aly_M00097  beta-Carotene biosynthesis, GGAP => beta-carotene [PATH:aly01100]
aly_M00098  Acylglycerol degradation [PATH:aly01100]
aly_M00100  Sphingosine degradation [PATH:aly01100]
aly_M00112  Tocopherol/tocotorienol biosynthesis, homogentisate + phytyl/geranylgeranyl-PP => tocopherol/tocotorienol [PATH:aly01100]
aly_M00113  Jasmonic acid biosynthesis [PATH:aly01100]
aly_M00114  Ascorbate biosynthesis, plants, fructose-6P => ascorbate [PATH:aly01100]
aly_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:aly01100]
aly_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:aly01100]
aly_M00121  Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:aly01100]
aly_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:aly01100]
aly_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:aly01100]
aly_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:aly01100]
aly_M00132  Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH:aly01100]
aly_M00137  Flavanone biosynthesis, phenylalanine => naringenin [PATH:aly01100]
aly_M00138  Flavonoid biosynthesis, naringenin => pelargonidin [PATH:aly01100]
aly_M00145  NAD(P)H:quinone oxidoreductase, chloroplasts and cyanobacteria [PATH:aly01100]
aly_M00148  Succinate dehydrogenase (ubiquinone) [PATH:aly01100]
aly_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:aly01100]
aly_M00161  Photosystem II [PATH:aly01100]
aly_M00163  Photosystem I [PATH:aly01100]
aly_M00165  Reductive pentose phosphate cycle (Calvin cycle) [PATH:aly01100]
aly_M00168  CAM (Crassulacean acid metabolism), dark [PATH:aly01100]
aly_M00169  CAM (Crassulacean acid metabolism), light [PATH:aly01100]
aly_M00170  C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type [PATH:aly01100]
aly_M00171  C4-dicarboxylic acid cycle, NAD - malic enzyme type [PATH:aly01100]
aly_M00172  C4-dicarboxylic acid cycle, NADP - malic enzyme type [PATH:aly01100]
aly_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:aly01100]
aly_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aly01100]
aly_M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:aly01100]
aly_M00368  Ethylene biosynthesis, methionine => ethylene [PATH:aly01100]
aly_M00370  Glucosinolate biosynthesis, tryptophan => glucobrassicin [PATH:aly01100]
aly_M00372  Abscisic acid biosynthesis, beta-carotene => abscisic acid [PATH:aly01100]
aly_M00415  Fatty acid elongation in endoplasmic reticulum [PATH:aly01100]
aly_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:aly01100]
aly_M00527  Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:aly01100]
aly_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:aly01100]
aly_M00532  Photorespiration [PATH:aly01100]
aly_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:aly01100]
aly_M00555  Betaine biosynthesis, choline => betaine [PATH:aly01100]
aly_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:aly01100]
aly_M00621  Glycine cleavage system [PATH:aly01100]
aly_M00844  Arginine biosynthesis, ornithine => arginine [PATH:aly01100]
aly_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:aly01100]
aly_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:aly01100]
aly_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:aly01100]
aly_M00882  Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH:aly01100]
aly_M00892  UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH:aly01100]
aly_M00897  Thiamine biosynthesis, plants, AIR (+ NAD+) => TMP/thiamine/TPP [PATH:aly01100]
aly_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:aly01100]
aly_M00910  Phenylalanine biosynthesis, chorismate => arogenate => phenylalanine [PATH:aly01100]
aly_M00916  Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:aly01100]
aly_M00917  Phytosterol biosynthesis, squalene 2,3-epoxide => campesterol/sitosterol [PATH:aly01100]
aly_M00927  Gibberellin A12 biosynthesis, GAPP => GA12 [PATH:aly01100]
aly_M00928  Gibberellin A4/A1 biosynthesis, GA12/GA53 => GA4/GA1 [PATH:aly01100]
aly_M00932  Phylloquinone biosynthesis, chorismate (+ phytyl-PP) => phylloquinol [PATH:aly01100]
aly_M00933  Plastoquinone biosynthesis, homogentisate + solanesyl-PP => plastoquinol [PATH:aly01100]
aly_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:aly01100]
aly_M00970  Proline degradation, proline => glutamate [PATH:aly01100]
aly_M00972  Proline metabolism [PATH:aly01100]
Organism
Arabidopsis lyrata (lyrate rockcress) [GN:aly]
Related
pathway
aly00010  Glycolysis / Gluconeogenesis
aly00020  Citrate cycle (TCA cycle)
aly00030  Pentose phosphate pathway
aly00040  Pentose and glucuronate interconversions
aly00051  Fructose and mannose metabolism
aly00052  Galactose metabolism
aly00053  Ascorbate and aldarate metabolism
aly00061  Fatty acid biosynthesis
aly00062  Fatty acid elongation
aly00071  Fatty acid degradation
aly00073  Cutin, suberine and wax biosynthesis
aly00100  Steroid biosynthesis
aly00130  Ubiquinone and other terpenoid-quinone biosynthesis
aly00190  Oxidative phosphorylation
aly00195  Photosynthesis
aly00196  Photosynthesis - antenna proteins
aly00220  Arginine biosynthesis
aly00230  Purine metabolism
aly00232  Caffeine metabolism
aly00240  Pyrimidine metabolism
aly00250  Alanine, aspartate and glutamate metabolism
aly00260  Glycine, serine and threonine metabolism
aly00261  Monobactam biosynthesis
aly00270  Cysteine and methionine metabolism
aly00280  Valine, leucine and isoleucine degradation
aly00290  Valine, leucine and isoleucine biosynthesis
aly00300  Lysine biosynthesis
aly00310  Lysine degradation
aly00330  Arginine and proline metabolism
aly00340  Histidine metabolism
aly00350  Tyrosine metabolism
aly00360  Phenylalanine metabolism
aly00380  Tryptophan metabolism
aly00400  Phenylalanine, tyrosine and tryptophan biosynthesis
aly00410  beta-Alanine metabolism
aly00430  Taurine and hypotaurine metabolism
aly00440  Phosphonate and phosphinate metabolism
aly00450  Selenocompound metabolism
aly00460  Cyanoamino acid metabolism
aly00470  D-Amino acid metabolism
aly00480  Glutathione metabolism
aly00500  Starch and sucrose metabolism
aly00510  N-Glycan biosynthesis
aly00511  Other glycan degradation
aly00513  Various types of N-glycan biosynthesis
aly00514  Other types of O-glycan biosynthesis
aly00520  Amino sugar and nucleotide sugar metabolism
aly00531  Glycosaminoglycan degradation
aly00543  Exopolysaccharide biosynthesis
aly00561  Glycerolipid metabolism
aly00562  Inositol phosphate metabolism
aly00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
aly00564  Glycerophospholipid metabolism
aly00565  Ether lipid metabolism
aly00590  Arachidonic acid metabolism
aly00591  Linoleic acid metabolism
aly00592  alpha-Linolenic acid metabolism
aly00600  Sphingolipid metabolism
aly00601  Glycosphingolipid biosynthesis - lacto and neolacto series
aly00603  Glycosphingolipid biosynthesis - globo and isoglobo series
aly00604  Glycosphingolipid biosynthesis - ganglio series
aly00620  Pyruvate metabolism
aly00630  Glyoxylate and dicarboxylate metabolism
aly00640  Propanoate metabolism
aly00650  Butanoate metabolism
aly00660  C5-Branched dibasic acid metabolism
aly00670  One carbon pool by folate
aly00710  Carbon fixation in photosynthetic organisms
aly00730  Thiamine metabolism
aly00740  Riboflavin metabolism
aly00750  Vitamin B6 metabolism
aly00760  Nicotinate and nicotinamide metabolism
aly00770  Pantothenate and CoA biosynthesis
aly00780  Biotin metabolism
aly00785  Lipoic acid metabolism
aly00790  Folate biosynthesis
aly00860  Porphyrin metabolism
aly00900  Terpenoid backbone biosynthesis
aly00901  Indole alkaloid biosynthesis
aly00902  Monoterpenoid biosynthesis
aly00904  Diterpenoid biosynthesis
aly00905  Brassinosteroid biosynthesis
aly00906  Carotenoid biosynthesis
aly00908  Zeatin biosynthesis
aly00909  Sesquiterpenoid and triterpenoid biosynthesis
aly00910  Nitrogen metabolism
aly00920  Sulfur metabolism
aly00940  Phenylpropanoid biosynthesis
aly00941  Flavonoid biosynthesis
aly00942  Anthocyanin biosynthesis
aly00944  Flavone and flavonol biosynthesis
aly00950  Isoquinoline alkaloid biosynthesis
aly00960  Tropane, piperidine and pyridine alkaloid biosynthesis
aly00965  Betalain biosynthesis
aly00966  Glucosinolate biosynthesis
aly00999  Biosynthesis of various plant secondary metabolites
aly01040  Biosynthesis of unsaturated fatty acids
KO pathway
ko01100   
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