KEGG   PATHWAY: bxe00270
Entry
bxe00270                    Pathway                                
Name
Cysteine and methionine metabolism - Paraburkholderia xenovorans LB400
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
bxe00270  Cysteine and methionine metabolism
bxe00270

Module
bxe_M00021  Cysteine biosynthesis, serine => cysteine [PATH:bxe00270]
Other DBs
GO: 0006534 0006555
Organism
Paraburkholderia xenovorans LB400 [GN:bxe]
Gene
Bxe_C0121  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
Bxe_B2247  Putative hexapeptide transferase family protein [KO:K00640] [EC:2.3.1.30]
Bxe_B1555  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
Bxe_B0616  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
Bxe_A1621  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
Bxe_C0241  cysteine synthase [KO:K01738] [EC:2.5.1.47]
Bxe_C1131  cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]
Bxe_A2333  cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]
Bxe_A4243  methionine synthase (B12-dependent) [KO:K00548] [EC:2.1.1.13]
Bxe_A4240  methionine synthase (B12-dependent) [KO:K00548] [EC:2.1.1.13]
Bxe_B1250  methionine synthase (B12-independent) [KO:K00549] [EC:2.1.1.14]
Bxe_A4371  methionine adenosyltransferase [KO:K00789] [EC:2.5.1.6]
Bxe_B0336  putative spermidine synthase [KO:K00797] [EC:2.5.1.16]
Bxe_B0334  putative spermidine synthase [KO:K00797] [EC:2.5.1.16]
Bxe_C0180  Putative acyl transferase [KO:K00797] [EC:2.5.1.16]
Bxe_A0564  spermidine synthase [KO:K00797] [EC:2.5.1.16]
Bxe_B0330  Putative spermidine synthase [KO:K00797] [EC:2.5.1.16]
Bxe_B0608  putative autoinducer synthesis protein [KO:K13060] [EC:2.3.1.184]
Bxe_C0415  Putative autoinducer synthesis protein [KO:K20250] [EC:2.3.1.184]
Bxe_A1338  methylthioadenosine nucleosidase [KO:K01243] [EC:3.2.2.9]
Bxe_A2345  Protein of unknown function DUF152 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
Bxe_C0728  Putative hydrolase [KO:K12960] [EC:3.5.4.31 3.5.4.28]
Bxe_B1222  aromatic amino acid aminotransferase apoenzyme [KO:K00832] [EC:2.6.1.57]
Bxe_A3154  aminotransferase [KO:K00832] [EC:2.6.1.57]
Bxe_A3274  Putative sensor with GAF domain [KO:K08968] [EC:1.8.4.14]
Bxe_A3354  C-5 cytosine-specific DNA methylase [KO:K00558] [EC:2.1.1.37]
Bxe_A1222  C-5 cytosine-specific DNA methylase [KO:K00558] [EC:2.1.1.37]
Bxe_A0178  adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
Bxe_B1212  1-aminocyclopropane-1-carboxylate deaminase [KO:K01505] [EC:3.5.99.7]
Bxe_A1630  aspartate kinase [KO:K00928] [EC:2.7.2.4]
Bxe_B2885  aspartate semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
Bxe_A2381  homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
Bxe_A4388  homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
Bxe_B0598  homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
Bxe_A1357  O-acetylhomoserine sulfhydrolase [KO:K01740] [EC:2.5.1.49]
Bxe_B2873  O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
Bxe_B0360  branched chain amino acid aminotransferase apoenzyme [KO:K00826] [EC:2.6.1.42]
Bxe_A0686  branched chain amino acid aminotransferase apoenzyme [KO:K00826] [EC:2.6.1.42]
Bxe_A4484  glutamate-cysteine ligase [KO:K01919] [EC:6.3.2.2]
Bxe_A4188  Putative glutamate-cysteine ligase [KO:K01919] [EC:6.3.2.2]
Bxe_A4187  glutathione synthase [KO:K01920] [EC:6.3.2.3]
Bxe_B2831  3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
Bxe_C0931  Putative rhodanese-like sulfur transferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
Bxe_A3891  aminotransferase [KO:K09758] [EC:4.1.1.12]
Bxe_A1530  Aspartate racemase [KO:K25316] [EC:5.1.1.10]
Bxe_B1896  Putative D-isomer specific 2-hydroxyacid dehydrogenase [KO:K16843] [EC:1.1.1.310]
Bxe_B2898  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Bxe_A0052  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
Bxe_B0082  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
Bxe_B1601  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
Bxe_A0990  cysteine synthase [KO:K12339] [EC:2.5.1.144]
Bxe_B2128  putative 2-hydroxyacid dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
Bxe_B1744  putative 2-hydroxyacid dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
Bxe_A4423  Putative 2-hydroxyacid dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
Bxe_A0976  phosphoserine aminotransferase apoenzyme [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
bxe00010  Glycolysis / Gluconeogenesis
bxe00250  Alanine, aspartate and glutamate metabolism
bxe00260  Glycine, serine and threonine metabolism
bxe00290  Valine, leucine and isoleucine biosynthesis
bxe00430  Taurine and hypotaurine metabolism
bxe00480  Glutathione metabolism
bxe00620  Pyruvate metabolism
bxe00640  Propanoate metabolism
bxe00770  Pantothenate and CoA biosynthesis
bxe00900  Terpenoid backbone biosynthesis
bxe00920  Sulfur metabolism
KO pathway
ko00270   
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