KEGG   PATHWAY: cbai04137
Entry
cbai04137                   Pathway                                
Name
Mitophagy - animal - Camelus bactrianus (Bactrian camel)
Description
Mitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process called reactive oxidative species (ROS) lead to mitochondrial dysfunction. If the damage is too excessive to be repaired, such mitochondria are selectively recognized and targeted for degradation by a specific mode of autophagy, termed mitophagy. The loss of the mitochondrial membrane potential can induce mitophagy, involving the kinase PINK1 and the E3 ligase Parkin. PINK1 serves as the sensor for the mitochondrial depolarization and recruits Parkin, followed by ubiquitin-dependent recruitment of mitophagy receptors. There are also several PINK1/Parkin-independent mitophagy pathways, in which a group of LIR-containing receptors are required in response to different stimuli. Mitophagy contributes to the maintenance of a healthy mitochondrial network and the prevention of programmed cell death.
Class
Cellular Processes; Transport and catabolism
Pathway map
cbai04137  Mitophagy - animal
cbai04137

Other DBs
GO: 0000422
Organism
Camelus bactrianus (Bactrian camel) [GN:cbai]
Gene
105076466  AMBRA1; LOW QUALITY PROTEIN: activating molecule in BECN1-regulated autophagy protein 1 [KO:K17985]
105070892  PINK1; serine/threonine-protein kinase PINK1, mitochondrial [KO:K05688] [EC:2.7.11.1]
105062502  TOMM40; mitochondrial import receptor subunit TOM40 homolog [KO:K11518]
105069556  TOMM40L; mitochondrial import receptor subunit TOM40B [KO:K11518]
105075101  TOMM20; mitochondrial import receptor subunit TOM20 homolog [KO:K17770]
105074625  TOMM20L; TOMM20-like protein 1 [KO:K17770]
105077916  TOMM70A; mitochondrial import receptor subunit TOM70 [KO:K17768]
105077461  E3 ubiquitin-protein ligase parkin-like [KO:K04556] [EC:2.3.2.31]
105081831  MARCH5; E3 ubiquitin-protein ligase MARCH5 [KO:K10660] [EC:2.3.2.27]
105068625  TRAF2; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
105077220  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
105063966  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
105078711  AMFR; E3 ubiquitin-protein ligase AMFR [KO:K10636] [EC:2.3.2.36]
105070894  MUL1; mitochondrial ubiquitin ligase activator of NFKB 1 isoform X1 [KO:K15688] [EC:2.3.2.27]
105081524  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
105065144  SIAH1; E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
105069213  ARIH1; E3 ubiquitin-protein ligase ARIH1 [KO:K11968] [EC:2.3.2.31]
105063315  MFN1; mitofusin-1 [KO:K21356] [EC:3.6.5.-]
105070960  MFN2; mitofusin-2 [KO:K06030] [EC:3.6.5.-]
105071603  RHOT1; mitochondrial Rho GTPase 1 [KO:K07870] [EC:3.6.5.-]
105065721  RHOT2; mitochondrial Rho GTPase 2 [KO:K07871] [EC:3.6.5.-]
105082583  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
105066513  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
105084062  UBB; polyubiquitin-B [KO:K04551]
105080679  UBC; polyubiquitin-C [KO:K08770]
105082056  TAX1BP1; tax1-binding protein 1 isoform X1 [KO:K21347]
105062004  SQSTM1; sequestosome-1 [KO:K14381]
105073317  CALCOCO2; calcium-binding and coiled-coil domain-containing protein 2 [KO:K21348]
105072467  OPTN; optineurin [KO:K19946]
105080079  NBR1; next to BRCA1 gene 1 protein isoform X1 [KO:K17987]
105081359  TBK1; serine/threonine-protein kinase TBK1 isoform X1 [KO:K05410] [EC:2.7.11.10]
105077483  GABARAP; gamma-aminobutyric acid receptor-associated protein [KO:K08341]
105078709  GABARAPL2; gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341]
105062205  GABARAPL1; gamma-aminobutyric acid receptor-associated protein-like 1 [KO:K08341]
105079449  MAP1LC3B; microtubule-associated proteins 1A/1B light chain 3B [KO:K10435]
105073539  MAP1LC3A; microtubule-associated proteins 1A/1B light chain 3A [KO:K10435]
105080094  BECN1; beclin-1 isoform X1 [KO:K08334]
105083568  beclin-2-like [KO:K08334]
105077018  USP8; LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 8 [KO:K11839] [EC:3.4.19.12]
105064150  USP15; ubiquitin carboxyl-terminal hydrolase 15 isoform X1 [KO:K21343] [EC:3.4.19.12]
105075665  USP30; ubiquitin carboxyl-terminal hydrolase 30 [KO:K11851] [EC:3.4.19.12]
105073585  BCL2L1; bcl-2-like protein 1 [KO:K04570]
105063727  PGAM5; serine/threonine-protein phosphatase PGAM5, mitochondrial [KO:K15637] [EC:3.1.3.16]
105078670  CSNK2A2; casein kinase II subunit alpha' [KO:K03097] [EC:2.7.11.1]
105073602  CSNK2A1; casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
105074066  CSNK2B; casein kinase II subunit beta isoform X1 [KO:K03115]
105073493  SRC; proto-oncogene tyrosine-protein kinase Src [KO:K05704] [EC:2.7.10.2]
105063754  ULK1; LOW QUALITY PROTEIN: serine/threonine-protein kinase ULK1 [KO:K21357] [EC:2.7.11.1]
105079352  FUNDC1; FUN14 domain-containing protein 1 [KO:K17986]
105067087  BNIP3; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [KO:K15464]
105063785  BNIP3L; LOW QUALITY PROTEIN: BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like [KO:K15465]
105076087  BCL2L13; bcl-2-like protein 13 [KO:K15485]
105082579  FKBP8; peptidyl-prolyl cis-trans isomerase FKBP8 isoform X1 [KO:K09574] [EC:5.2.1.8]
105073037  SAMM50; sorting and assembly machinery component 50 homolog [KO:K07277]
105075278  PHB2; prohibitin-2 [KO:K17081]
105067787  NLRX1; NLR family member X1 isoform X1 [KO:K12653]
105068158  MTX1; metaxin-1 [KO:K17776]
105064440  MTX3; metaxin-3 [KO:K17776]
105073463  MTX2; metaxin-2 isoform X1 [KO:K17776]
105072126  EIF2AK3; eukaryotic translation initiation factor 2-alpha kinase 3 isoform X1 [KO:K08860] [EC:2.7.11.1]
105074689  EIF2S1; eukaryotic translation initiation factor 2 subunit 1 [KO:K03237]
105073101  ATF4; cyclic AMP-dependent transcription factor ATF-4 [KO:K04374]
105075609  MAPK8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
105077723  MAPK10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
105062001  MAPK9; mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
105071674  JUN; transcription factor AP-1 [KO:K04448]
105070689  RELA; transcription factor p65 [KO:K04735]
105069943  HRAS; GTPase HRas isoform X1 [KO:K02833]
105062297  KRAS; GTPase KRas [KO:K07827]
105079555  NRAS; GTPase NRas [KO:K07828]
105066844  MRAS; ras-related protein M-Ras [KO:K07831]
105062641  RRAS; ras-related protein R-Ras [KO:K07829]
105076612  RRAS2; ras-related protein R-Ras2 [KO:K07830]
105073627  E2F1; transcription factor E2F1 [KO:K17454]
105074647  HIF1A; hypoxia-inducible factor 1-alpha [KO:K08268]
105076285  SP1; transcription factor Sp1 [KO:K04684]
105077515  TP53; cellular tumor antigen p53 [KO:K04451]
105077103  FOXO3; forkhead box protein O3 [KO:K09408]
105077277  CITED2; cbp/p300-interacting transactivator 2 [KO:K21361]
105066594  MITF; microphthalmia-associated transcription factor isoform X1 [KO:K09455]
105083767  TFEB; LOW QUALITY PROTEIN: transcription factor EB [KO:K15590]
105079406  TFE3; transcription factor E3 [KO:K09105]
105082750  RABGEF1; rab5 GDP/GTP exchange factor isoform X1 [KO:K20131]
105072592  RAB5A; ras-related protein Rab-5A [KO:K07887]
105075909  RAB5B; ras-related protein Rab-5B [KO:K07888]
105080121  RAB5C; ras-related protein Rab-5C [KO:K07889]
105080242  MON1A; vacuolar fusion protein MON1 homolog A [KO:K20195]
105078781  MON1B; LOW QUALITY PROTEIN: vacuolar fusion protein MON1 homolog B [KO:K20195]
105077293  CCZ1; vacuolar fusion protein CCZ1 homolog [KO:K27045]
105073915  RAB7A; ras-related protein Rab-7a [KO:K07897]
105075437  RAB7B; ras-related protein Rab-7b [KO:K07898]
105072046  TBC1D15; TBC1 domain family member 15 isoform X1 [KO:K20168]
105062651  TBC1D17; TBC1 domain family member 17 [KO:K19945]
105067249  FIS1; mitochondrial fission 1 protein isoform X1 [KO:K17969]
105064036  ATG9A; autophagy-related protein 9A [KO:K17907]
105067035  ATG9B; autophagy-related protein 9B [KO:K17907]
105072363  OPA1; LOW QUALITY PROTEIN: dynamin-like 120 kDa protein, mitochondrial [KO:K17079] [EC:3.6.5.5]
105067314  VCP; transitional endoplasmic reticulum ATPase [KO:K13525]
Compound
C00035  GDP
C00044  GTP
Reference
  Authors
Pickrell AM, Youle RJ
  Title
The roles of PINK1, parkin, and mitochondrial fidelity in Parkinson's disease.
  Journal
Neuron 85:257-73 (2015)
DOI:10.1016/j.neuron.2014.12.007
Reference
  Authors
Durcan TM, Fon EA
  Title
The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications.
  Journal
Genes Dev 29:989-99 (2015)
DOI:10.1101/gad.262758.115
Reference
  Authors
Shirihai OS, Song M, Dorn GW 2nd
  Title
How mitochondrial dynamism orchestrates mitophagy.
  Journal
Circ Res 116:1835-49 (2015)
DOI:10.1161/CIRCRESAHA.116.306374
Reference
  Authors
Hamacher-Brady A, Brady NR
  Title
Mitophagy programs: mechanisms and physiological implications of mitochondrial targeting by autophagy.
  Journal
Cell Mol Life Sci 73:775-95 (2016)
DOI:10.1007/s00018-015-2087-8
Reference
  Authors
Yamano K, Matsuda N, Tanaka K
  Title
The ubiquitin signal and autophagy: an orchestrated dance leading to mitochondrial degradation.
  Journal
EMBO Rep 17:300-16 (2016)
DOI:10.15252/embr.201541486
Reference
  Authors
Yamaguchi O, Murakawa T, Nishida K, Otsu K
  Title
Receptor-mediated mitophagy.
  Journal
J Mol Cell Cardiol 95:50-6 (2016)
DOI:10.1016/j.yjmcc.2016.03.010
Reference
  Authors
Roberts RF, Tang MY, Fon EA, Durcan TM
  Title
Defending the mitochondria: The pathways of mitophagy and mitochondrial-derived vesicles.
  Journal
Int J Biochem Cell Biol 79:427-436 (2016)
DOI:10.1016/j.biocel.2016.07.020
Reference
  Authors
Arena G, Valente EM
  Title
PINK1 in the limelight: multiple functions of an eclectic protein in human health and disease.
  Journal
J Pathol 241:251-263 (2017)
DOI:10.1002/path.4815
Related
pathway
cbai04140  Autophagy - animal
cbai04210  Apoptosis
KO pathway
ko04137   
LinkDB

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