KEGG   PATHWAY: ccrc04120
Entry
ccrc04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Colias croceus (clouded yellow)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ccrc04120  Ubiquitin mediated proteolysis
ccrc04120

Other DBs
GO: 0016567
Organism
Colias croceus (clouded yellow) [GN:ccrc]
Gene
123698646  polyubiquitin-C isoform X1 [KO:K08770]
123694010  ubiquitin-60S ribosomal protein L40 [KO:K02927]
123696682  ubiquitin-40S ribosomal protein S27a [KO:K02977]
123696535  ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
123699070  SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
123694340  SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
123693346  NEDD8-activating enzyme E1 catalytic subunit [KO:K10686] [EC:6.2.1.64]
123700814  ubiquitin-conjugating enzyme E2-17 kDa [KO:K10573] [EC:2.3.2.23]
123701693  ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
123693751  ubiquitin-conjugating enzyme E2-17 kDa [KO:K06689] [EC:2.3.2.23]
123691275  ubiquitin-conjugating enzyme E2-24 kDa isoform X1 [KO:K20217] [EC:2.3.2.23]
123696539  NEDD8-conjugating enzyme UBE2F-like [KO:K10687] [EC:2.3.2.34]
123700093  ubiquitin-conjugating enzyme E2 G1 isoform X1 [KO:K10575] [EC:2.3.2.23]
123705032  ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
123703593  ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
123696060  SUMO-conjugating enzyme UBC9-A [KO:K10577]
123699445  ubiquitin-conjugating enzyme E2 J1-like [KO:K10578] [EC:2.3.2.23]
123698382  ubiquitin-conjugating enzyme E2 J2-like [KO:K04554] [EC:2.3.2.23]
123705385  ubiquitin-conjugating enzyme E2-22 kDa [KO:K04649] [EC:2.3.2.23]
123700492  ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
123705659  NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
123694732  ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
123695373  (E3-independent) E2 ubiquitin-conjugating enzyme UBE2O isoform X1 [KO:K10581] [EC:2.3.2.24]
123698481  ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
123690765  ubiquitin-conjugating enzyme E2Q-like protein CG4502 [KO:K10582] [EC:2.3.2.23]
123698968  ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
123690851  ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
123694184  ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
123699774  baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
123692172  ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
123691295  ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
123690917  ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
123695312  E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
123706189  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase Su(dx)-like [KO:K05633] [EC:2.3.2.26]
123705663  E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
123699093  E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
123705660  E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
123700953  probable E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
123693098  probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
123696276  ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
123698260  ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
123695279  E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
123691273  RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
123691378  pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
123696675  E3 ubiquitin-protein ligase Mdm2-like [KO:K06643] [EC:2.3.2.27]
123703854  E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K04707] [EC:2.3.2.27]
123691128  E3 ubiquitin-protein ligase SIAH1A-like [KO:K04506] [EC:2.3.2.27]
123694399  cysteine and histidine-rich protein 1-like isoform X1 [KO:K04506] [EC:2.3.2.27]
123692171  TNF receptor-associated factor 6-like [KO:K03175] [EC:2.3.2.27]
123702183  E3 ubiquitin-protein ligase COP1-like [KO:K10143] [EC:2.3.2.27]
123699020  RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
123698899  E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K04706] [EC:2.3.2.-]
123699634  E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
123691058  uncharacterized protein LOC123691058 [KO:K10608] [EC:2.3.2.27]
123692168  RING-box protein 1A [KO:K03868] [EC:2.3.2.32]
123704014  cullin-1 [KO:K03347]
123692167  S-phase kinase-associated protein 1 [KO:K03094]
123702325  F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
123705138  F-box/WD repeat-containing protein 7 [KO:K10260]
123704382  cullin-2 [KO:K03870]
123701843  elongin-C [KO:K03872]
123694951  elongin-B [KO:K03873]
123705901  cullin-3-A [KO:K03869]
123692897  kelch-like ECH-associated protein 1B isoform X1 [KO:K10456]
123702843  rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
123694823  cullin-4A isoform X1 [KO:K10609]
123699730  DNA damage-binding protein 1 [KO:K10610]
123698343  DET1 homolog [KO:K10571]
123696790  RING-box protein 2 [KO:K10611]
123696893  cullin-5 [KO:K10612]
123699873  anaphase-promoting complex subunit 2 [KO:K03349]
123697003  cell division cycle protein 20 homolog [KO:K03363]
123705332  fizzy-related protein homolog [KO:K03364]
123697184  anaphase-promoting complex subunit 1 [KO:K03348]
123694352  cell division cycle protein 27 homolog [KO:K03350]
123692095  anaphase-promoting complex subunit 4 [KO:K03351]
123706294  anaphase-promoting complex subunit 5 [KO:K03352]
123706486  cell division cycle protein 23 homolog [KO:K03355]
123691851  anaphase-promoting complex subunit 10 [KO:K03357]
123705937  anaphase-promoting complex subunit 13 [KO:K12456]
123698696  anaphase-promoting complex subunit 15A-like isoform X1 [KO:K25228]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
ccrc03050  Proteasome
KO pathway
ko04120   
LinkDB

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