KEGG PATHWAY: dze00270

PATHWAY: dze00270

Entry

dze00270                    Pathway

Name

Cysteine and methionine metabolism - Dickeya chrysanthemi

Description

Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].

Class

Metabolism; Amino acid metabolism

Pathway map

dze00270

Cysteine and methionine metabolism

Module

dze_M00017

Methionine biosynthesis, aspartate => homoserine => methionine [PATH:dze00270]

dze_M00021

Cysteine biosynthesis, serine => cysteine [PATH:dze00270]

dze_M00034

Methionine salvage pathway [PATH:dze00270]

Other DBs

GO:	0006534 0006555

Organism

Dickeya chrysanthemi [GN:dze]

Gene

Dd1591_3938

serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]

Dd1591_3268

cysteine synthase A [KO:K01738] [EC:2.5.1.47]

Dd1591_3061

Pyridoxal-5'-phosphate-dependent protein beta subunit [KO:K01738] [EC:2.5.1.47]

Dd1591_3762

cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]

Dd1591_0369

methionine synthase [KO:K00548] [EC:2.1.1.13]

Dd1591_3934

5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase [KO:K00549] [EC:2.1.1.14]

Dd1591_1862

Methionine synthase vitamin-B12 independent [KO:K00549] [EC:2.1.1.14]

Dd1591_3115

Methionine synthase vitamin-B12 independent [KO:K00549] [EC:2.1.1.14]

Dd1591_0506

S-adenosylmethionine synthetase [KO:K00789] [EC:2.5.1.6]

Dd1591_1015

S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]

Dd1591_1016

spermidine synthase [KO:K00797] [EC:2.5.1.16]

Dd1591_0101

Acyl-homoserine-lactone synthase [KO:K22956] [EC:2.3.1.184]

Dd1591_1040

Adenosylhomocysteine nucleosidase [KO:K01243] [EC:3.2.2.9]

Dd1591_0889

5-methylthioribose kinase [KO:K00899] [EC:2.7.1.100]

Dd1591_1003

protein of unknown function DUF152 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]

Dd1591_0888

translation initiation factor, aIF-2BI family [KO:K08963] [EC:5.3.1.23]

Dd1591_0885

methylthioribulose-1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]

Dd1591_0886

2,3-diketo-5-methylthio-1-phosphopentane phosphatase [KO:K09880] [EC:3.1.3.77]

Dd1591_0887

Acireductone dioxygenase ARD [KO:K08967] [EC:1.13.11.53 1.13.11.54]

Dd1591_0702

aminotransferase class I and II [KO:K00832] [EC:2.6.1.57]

Dd1591_1843

putative GAF sensor protein [KO:K08968] [EC:1.8.4.14]

Dd1591_1470

DNA-cytosine methyltransferase [KO:K00558] [EC:2.1.1.37]

Dd1591_0465

DNA-cytosine methyltransferase [KO:K00558] [EC:2.1.1.37]

Dd1591_0988

quorum-sensing autoinducer 2 (AI-2), LuxS [KO:K07173] [EC:4.4.1.21]

Dd1591_3623

1-aminocyclopropane-1-carboxylate deaminase [KO:K01505] [EC:3.5.99.7]

Dd1591_0372

aspartate kinase [KO:K00928] [EC:2.7.2.4]

Dd1591_0533

aspartate kinase [KO:K12524] [EC:2.7.2.4 1.1.1.3]

Dd1591_0121

aspartate kinase [KO:K12525] [EC:2.7.2.4 1.1.1.3]

Dd1591_0219

aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]

Dd1591_0364

homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]

Dd1591_3724

alpha/beta hydrolase fold protein [KO:K00641] [EC:2.3.1.31 2.3.1.46]

Dd1591_0120

O-succinylhomoserine (thiol)-lyase [KO:K01739] [EC:2.5.1.48]

Dd1591_1056

O-acetylhomoserine/O-acetylserine sulfhydrylase [KO:K01740] [EC:2.5.1.49]

Dd1591_0140

branched-chain amino acid aminotransferase [KO:K00826] [EC:2.6.1.42]

Dd1591_0987

glutamate/cysteine ligase [KO:K01919] [EC:6.3.2.2]

Dd1591_0502

glutathione synthetase [KO:K01920] [EC:6.3.2.3]

Dd1591_2591

aminotransferase class I and II [KO:K00812] [EC:2.6.1.1]

Dd1591_1664

Aspartate transaminase [KO:K00813] [EC:2.6.1.1]

Dd1591_1113

Rhodanese domain protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]

Dd1591_3484

malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]

Dd1591_1241

L-serine dehydratase 1 [KO:K01752] [EC:4.3.1.17]

Dd1591_1985

L-serine dehydratase 1 [KO:K01752] [EC:4.3.1.17]

Dd1591_3277

cysteine synthase B [KO:K12339] [EC:2.5.1.144]

Dd1591_0520

D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [KO:K00058] [EC:1.1.1.95 1.1.1.399]

Dd1591_3184

D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [KO:K00058] [EC:1.1.1.95 1.1.1.399]

Dd1591_0020

aminotransferase class V [KO:K00831] [EC:2.6.1.52]

Dd1591_2342

phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]

Compound

C00019

S-Adenosyl-L-methionine

C00021

S-Adenosyl-L-homocysteine

C00022

Pyruvate

C00041

L-Alanine

C00049

L-Aspartate

C00051

Glutathione

C00059

Sulfate

C00065

L-Serine

C00073

L-Methionine

C00094

Sulfite

C00097

L-Cysteine

C00109

2-Oxobutanoate

C00155

L-Homocysteine

C00170

5'-Methylthioadenosine

C00197

3-Phospho-D-glycerate

C00263

L-Homoserine

C00283

Hydrogen sulfide

C00409

Methanethiol

C00441

L-Aspartate 4-semialdehyde

C00491

L-Cystine

C00506

L-Cysteate

C00606

3-Sulfino-L-alanine

C00793

D-Cysteine

C00957

Mercaptopyruvate

C00979

O-Acetyl-L-serine

C01005

O-Phospho-L-serine

C01077

O-Acetyl-L-homoserine

C01118

O-Succinyl-L-homoserine

C01137

S-Adenosylmethioninamine

C01180

4-Methylthio-2-oxobutanoic acid

C01234

1-Aminocyclopropane-1-carboxylate

C01817

L-Homocystine

C01962

Thiocysteine

C02218

Dehydroalanine

C02291

L-Cystathionine

C02356

(S)-2-Aminobutanoate

C02989

L-Methionine S-oxide

C03082

4-Phospho-L-aspartate

C03089

5-Methylthio-D-ribose

C03145

N-Formylmethionine

C03232

3-Phosphonooxypyruvate

C03431

S-Inosyl-L-homocysteine

C03539

S-Ribosyl-L-homocysteine

C04188

S-Methyl-5-thio-D-ribose 1-phosphate

C04582

S-Methyl-5-thio-D-ribulose 1-phosphate

C05324

Nicotianamine

C05524

Aminoacyl-L-methionine

C05526

S-Glutathionyl-L-cysteine

C05527

3-Sulfinylpyruvate

C05528

3-Sulfopyruvate

C05823

3-Mercaptolactate

C05824

S-Sulfo-L-cysteine

C06547

Ethylene

C08276

3-(Methylthio)propanoate

C09306

Sulfur dioxide

C11437

1-Deoxy-D-xylulose 5-phosphate

C11481

HSO3-

C11499

(S)-3-Sulfolactate

C11537

(2R)-3-Sulfolactate

C15606

1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one

C15650

2,3-Diketo-5-methylthiopentyl-1-phosphate

C15651

2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate

C18049

N-Acyl-L-homoserine lactone

C19787

5'-S-Methyl-5'-thioinosine

C21015

gamma-L-Glutamyl-L-2-aminobutyrate

C21016

Ophthalmate

C22359

S-Methyl-1-thio-D-xylulose 5-phosphate

Reference

PMID:15102328

Authors

Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A

Title

Bacterial variations on the methionine salvage pathway.

Journal

BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9

Reference

PMID:14551435

Authors

Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.

Title

A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.

Journal

Science 302:286-90 (2003)
DOI:10.1126/science.1086997

Reference

PMID:12022921

Authors

Sekowska A, Danchin A.

Title

The methionine salvage pathway in Bacillus subtilis.

Journal

BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8

Reference

PMID:12670965

Authors

Berger BJ, English S, Chan G, Knodel MH.

Title

Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.

Journal

J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003

Reference

PMID:17169919

Authors

Goyer A, Collakova E, Shachar-Hill Y, Hanson AD

Title

Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.

Journal

Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055

Reference

PMID:17030798

Authors

Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S

Title

Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.

Journal

Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103

Reference

PMID:18625006

Authors

Pirkov I, Norbeck J, Gustafsson L, Albers E

Title

A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.

Journal

FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x

Reference

PMID:18391471

Authors

Ashida H, Saito Y, Kojima C, Yokota A

Title

Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.

Journal

Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651

Reference

PMID:10613873

Authors

Kitabatake M, So MW, Tumbula DL, Soll D

Title

Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?

Journal

J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000

Reference

PMID:12644499

Authors

Mino K, Ishikawa K

Title

Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.

Journal

J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003

Reference

PMID:18520135

Authors

Tanabe S

Title

Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.

Journal

Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881

Reference

Authors

Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).

Title

[Cellular Functions and Metabolic Maps] (In Japanese)

Journal

Tokyo Kagaku Dojin (1997)

Reference

PMID:19270684

Authors