KEGG   PATHWAY: ecra03250
Entry
ecra03250                   Pathway                                
Name
Viral life cycle - HIV-1 - Etheostoma cragini (Arkansas darter)
Class
Genetic Information Processing; Information processing in viruses
Pathway map
ecra03250  Viral life cycle - HIV-1
ecra03250

Organism
Etheostoma cragini (Arkansas darter) [GN:ecra]
Gene
117945601  C-C chemokine receptor type 1-like [KO:K04180]
117953001  cxcr4b; C-X-C chemokine receptor type 4b [KO:K04189]
117954807  C-X-C chemokine receptor type 4-like [KO:K04189]
117946240  cd4-1; CD4-1 molecule [KO:K06454]
117949351  map1ab; microtubule-associated protein 1B isoform X1 [KO:K10429]
117936154  microtubule-associated protein 1S-like [KO:K10429]
117959842  map1b; microtubule-associated protein 1B [KO:K10429]
117960378  map1aa; microtubule-associated protein 1A isoform X1 [KO:K10429]
117955267  fez1; fasciculation and elongation protein zeta-1 isoform X1 [KO:K25663]
117949199  bicd1a; protein bicaudal D homolog 1 [KO:K18739]
117943876  protein bicaudal D homolog 2-like [KO:K18739]
117938516  protein bicaudal D homolog 1-like isoform X1 [KO:K18739]
117947365  zgc:162200; protein bicaudal D homolog 2 [KO:K18739]
117948358  protein bicaudal D homolog 2-like isoform X1 [KO:K18739]
117940146  deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like isoform X1 [KO:K22544] [EC:3.1.5.-]
117947457  samhd1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1 [KO:K22544] [EC:3.1.5.-]
117959967  psip1a; PC4 and SFRS1 interacting protein 1a isoform X1 [KO:K25057]
117953043  pin1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
117945424  smarcb1a; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A [KO:K11648]
117958857  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like [KO:K11648]
117944885  ppiaa; peptidyl-prolyl cis-trans isomerase A [KO:K03767] [EC:5.2.1.8]
117959193  peptidyl-prolyl cis-trans isomerase-like [KO:K03767] [EC:5.2.1.8]
117959196  peptidyl-prolyl cis-trans isomerase-like [KO:K03767] [EC:5.2.1.8]
117949320  cleavage and polyadenylation specificity factor subunit 7-like [KO:K14398]
117938514  cpsf6; cleavage and polyadenylation specificity factor subunit 6 isoform X1 [KO:K14398]
117939025  tnpo3; LOW QUALITY PROTEIN: transportin-3 [KO:K15436]
117942950  interferon-induced GTP-binding protein Mx-like isoform X1 [KO:K14754]
117942951  interferon-induced GTP-binding protein Mx [KO:K14754]
117952354  ranbp2; E3 SUMO-protein ligase RanBP2 isoform X1 [KO:K12172] [EC:2.3.2.-]
117956537  nup153; nuclear pore complex protein Nup153 isoform X1 [KO:K14296]
117934766  crebbpa; CREB-binding protein isoform X1 [KO:K04498] [EC:2.3.1.48]
117936554  ep300a; CREB-binding protein isoform X1 [KO:K04498] [EC:2.3.1.48]
117958044  ep300b; histone acetyltransferase p300 isoform X1 [KO:K04498] [EC:2.3.1.48]
117958662  crebbpb; CREB binding protein b isoform X1 [KO:K04498] [EC:2.3.1.48]
117956968  kat2b; histone acetyltransferase KAT2B [KO:K06062] [EC:2.3.1.48]
117958413  kat2a; histone acetyltransferase KAT2A [KO:K06062] [EC:2.3.1.48]
117938892  mdfic; myoD family inhibitor domain-containing protein [KO:K27688]
117959234  cdk9; cyclin-dependent kinase 9 [KO:K02211] [EC:2.7.11.22 2.7.11.23]
117947069  ccnt1; cyclin-T1 isoform X1 [KO:K15188]
117953540  ccnt2a; cyclin-T2a isoform X1 [KO:K15188]
117956160  aff4; AF4/FMR2 family member 4 isoform X1 [KO:K15185]
117936271  RNA polymerase II elongation factor ELL-like [KO:K15183]
117944095  ell2; RNA polymerase II elongation factor ELL2 [KO:K15183]
117950506  ell; RNA polymerase II elongation factor ELL [KO:K15183]
117946848  RNA polymerase II elongation factor ELL2-like [KO:K15183]
117948563  RNA polymerase II elongation factor ELL [KO:K15183]
117962240  mllt3; protein AF-9 isoform X1 [KO:K15187]
117950064  mllt1a; protein ENL isoform X1 [KO:K15187]
117934644  nelfa; negative elongation factor A [KO:K15179]
117944730  nelfb; negative elongation factor B [KO:K15180]
117942877  nelfcd; negative elongation factor C/D [KO:K15181]
117956293  nelfe; negative elongation factor E [KO:K15182]
117955451  supt4h1; transcription elongation factor SPT4 [KO:K15171]
117938721  supt5h; transcription elongation factor SPT5 [KO:K15172]
117961834  xpo1a; exportin-1 [KO:K14290]
117959994  xpo1b; exportin-1 isoform X1 [KO:K14290]
117951967  ran; GTP-binding nuclear protein Ran [KO:K07936]
117948702  furinb; furin (paired basic amino acid cleaving enzyme) b [KO:K01349] [EC:3.4.21.75]
117949039  furina; furin (paired basic amino acid cleaving enzyme) a [KO:K01349] [EC:3.4.21.75]
117943731  si:ch73-267c23.10; serine incorporator 1 [KO:K25661]
117945212  serinc5; serine incorporator 5 [KO:K25655]
117958163  hgs; hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182]
117948852  tumor susceptibility gene 101 protein-like [KO:K12183]
117958636  charged multivesicular body protein 6-like isoform X1 [KO:K12195]
117948822  charged multivesicular body protein 4c-like isoform X1 [KO:K12194]
117943655  chmp4ba; charged multivesicular body protein 4b [KO:K12194]
117948025  charged multivesicular body protein 4b-like [KO:K12194]
117956798  pdcd6ip; programmed cell death 6-interacting protein isoform X1 [KO:K12200]
117948815  vps4a; vacuolar protein sorting-associated protein 4A [KO:K12196]
117950160  vacuolar protein sorting-associated protein 4B-like [KO:K12196]
117954505  vps4b; vacuolar protein sorting-associated protein 4B isoform X1 [KO:K12196]
Reference
PMID:27357278
  Authors
Li G, De Clercq E
  Title
HIV Genome-Wide Protein Associations: a Review of 30 Years of Research.
  Journal
Microbiol Mol Biol Rev 80:679-731 (2016)
DOI:10.1128/MMBR.00065-15
Reference
PMID:21284899
  Authors
Tagliamonte M, Tornesello ML, Buonaguro FM, Buonaguro L
  Title
Conformational HIV-1 envelope on particulate structures: a tool for chemokine coreceptor binding studies.
  Journal
J Transl Med 9 Suppl 1:S1 (2011)
DOI:10.1186/1479-5876-9-S1-S1
Reference
PMID:31028522
  Authors
Novikova M, Zhang Y, Freed EO, Peng K
  Title
Multiple Roles of HIV-1 Capsid during the Virus Replication Cycle.
  Journal
Virol Sin 34:119-134 (2019)
DOI:10.1007/s12250-019-00095-3
Reference
PMID:30286189
  Authors
Rawle DJ, Harrich D
  Title
Toward the "unravelling" of HIV: Host cell factors involved in HIV-1 core uncoating.
  Journal
PLoS Pathog 14:e1007270 (2018)
DOI:10.1371/journal.ppat.1007270
Reference
PMID:25036886
  Authors
Le Sage V, Mouland AJ, Valiente-Echeverria F
  Title
Roles of HIV-1 capsid in viral replication and immune evasion.
  Journal
Virus Res 193:116-29 (2014)
DOI:10.1016/j.virusres.2014.07.010
Reference
PMID:32429351
  Authors
Murphy RE, Saad JS
  Title
The Interplay between HIV-1 Gag Binding to the Plasma Membrane and Env Incorporation.
  Journal
Viruses 12:E548 (2020)
DOI:10.3390/v12050548
Reference
PMID:21360054
  Authors
He N, Zhou Q
  Title
New insights into the control of HIV-1 transcription: when Tat meets the 7SK snRNP and super elongation complex (SEC).
  Journal
J Neuroimmune Pharmacol 6:260-8 (2011)
DOI:10.1007/s11481-011-9267-6
Reference
PMID:19865606
  Authors
Pincetic A, Leis J
  Title
The Mechanism of Budding of Retroviruses From Cell Membranes.
  Journal
Adv Virol 2009:6239691-6239699 (2009)
DOI:10.1155/2009/623969
Reference
PMID:32858867
  Authors
Kleinpeter AB, Freed EO
  Title
HIV-1 Maturation: Lessons Learned from Inhibitors.
  Journal
Viruses 12:E940 (2020)
DOI:10.3390/v12090940
Reference
PMID:12944466
  Authors
Young TM, Wang Q, Pe'ery T, Mathews MB
  Title
The human I-mfa domain-containing protein, HIC, interacts with cyclin T1 and modulates P-TEFb-dependent transcription.
  Journal
Mol Cell Biol 23:6373-84 (2003)
DOI:10.1128/MCB.23.18.6373-6384.2003
Related
pathway
ecra03013  Nucleocytoplasmic transport
ecra04144  Endocytosis
KO pathway
ko03250   
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