KEGG   PATHWAY: gkd00270
Entry
gkd00270                    Pathway                                
Name
Cysteine and methionine metabolism - Grimontia kaedaensis
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
gkd00270  Cysteine and methionine metabolism
gkd00270

Module
gkd_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:gkd00270]
gkd_M00021  Cysteine biosynthesis, serine => cysteine [PATH:gkd00270]
Other DBs
GO: 0006534 0006555
Organism
Grimontia kaedaensis [GN:gkd]
Gene
K6Q96_00770  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
K6Q96_03745  cysK; cysteine synthase A [KO:K01738] [EC:2.5.1.47]
K6Q96_12515  PLP-dependent cysteine synthase family protein [KO:K01738] [EC:2.5.1.47]
K6Q96_17625  metC; cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]
K6Q96_05515  PatB family C-S lyase [KO:K14155] [EC:4.4.1.13]
K6Q96_10690  cysteine synthase family protein [KO:K01697] [EC:4.2.1.22]
K6Q96_01440  metH; methionine synthase [KO:K00548] [EC:2.1.1.13]
K6Q96_21885  methionine synthase [KO:K00549] [EC:2.1.1.14]
K6Q96_07130  metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase [KO:K00549] [EC:2.1.1.14]
K6Q96_02390  metK; methionine adenosyltransferase [KO:K00789] [EC:2.5.1.6]
K6Q96_09400  acyl-homoserine-lactone synthase [KO:K13062] [EC:2.3.1.184]
K6Q96_14350  mtnN; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [KO:K01243] [EC:3.2.2.9]
K6Q96_02870  pgeF; polyphenol oxidase [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
K6Q96_07185  aspartate/tyrosine/aromatic aminotransferase [KO:K00832] [EC:2.6.1.57]
K6Q96_20610  PLP-dependent transferase [KO:K01761] [EC:4.4.1.11]
K6Q96_08745  GAF domain-containing protein [KO:K08968] [EC:1.8.4.14]
K6Q96_13690  DNA cytosine methyltransferase [KO:K00558] [EC:2.1.1.37]
K6Q96_23500  aspartate kinase [KO:K00928] [EC:2.7.2.4]
K6Q96_01445  lysC; lysine-sensitive aspartokinase 3 [KO:K00928] [EC:2.7.2.4]
K6Q96_14290  thrA; bifunctional aspartate kinase/homoserine dehydrogenase I [KO:K12524] [EC:2.7.2.4 1.1.1.3]
K6Q96_00915  bifunctional aspartate kinase/homoserine dehydrogenase II [KO:K12525] [EC:2.7.2.4 1.1.1.3]
K6Q96_04285  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
K6Q96_12030  asd; aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
K6Q96_01430  metA; homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
K6Q96_00910  O-succinylhomoserine (thiol)-lyase [KO:K01739] [EC:2.5.1.48]
K6Q96_05355  O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase [KO:K01740] [EC:2.5.1.49]
K6Q96_16740  branched-chain amino acid transaminase [KO:K00826] [EC:2.6.1.42]
K6Q96_02755  gshA; glutamate--cysteine ligase [KO:K01919] [EC:6.3.2.2]
K6Q96_02370  gshB; glutathione synthase [KO:K01920] [EC:6.3.2.3]
K6Q96_21685  glutathione synthase [KO:K21456] [EC:6.3.2.3]
K6Q96_21190  aspartate/tyrosine/aromatic aminotransferase [KO:K00813] [EC:2.6.1.1]
K6Q96_20815  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
K6Q96_09880  aspartate/glutamate racemase family protein [KO:K25316] [EC:5.1.1.10]
K6Q96_15095  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K6Q96_17400  Ldh family oxidoreductase [KO:K16844] [EC:1.1.1.338]
K6Q96_22195  Ldh family oxidoreductase [KO:K16844] [EC:1.1.1.338]
K6Q96_22185  UxaA family hydrolase [KO:K16845] [EC:4.4.1.24]
K6Q96_22190  UxaA family hydrolase [KO:K16846] [EC:4.4.1.24]
K6Q96_19650  D-cysteine desulfhydrase [KO:K17950] [EC:4.4.1.25]
K6Q96_18975  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
K6Q96_10255  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
K6Q96_02590  serA; phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
K6Q96_11480  serC; 3-phosphoserine/phosphohydroxythreonine transaminase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
gkd00010  Glycolysis / Gluconeogenesis
gkd00250  Alanine, aspartate and glutamate metabolism
gkd00260  Glycine, serine and threonine metabolism
gkd00290  Valine, leucine and isoleucine biosynthesis
gkd00430  Taurine and hypotaurine metabolism
gkd00480  Glutathione metabolism
gkd00620  Pyruvate metabolism
gkd00640  Propanoate metabolism
gkd00770  Pantothenate and CoA biosynthesis
gkd00900  Terpenoid backbone biosynthesis
gkd00920  Sulfur metabolism
KO pathway
ko00270   
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