PATHWAY: pfc00470
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Entry
pfc00470 Pathway
Name
D-Amino acid metabolism - Pseudomonas fluorescens A506
Class
Metabolism; Metabolism of other amino acids
BRITE hierarchy
Pathway map
pfc00470
D-Amino acid metabolism
Ortholog table
Module
pfc_M00947
D-Arginine racemization, D-arginine => L-arginine [PATH:
pfc00470
]
pfc_M00948
Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:
pfc00470
]
Other DBs
GO:
0046416
Organism
Pseudomonas fluorescens A506 [GN:
pfc
]
Gene
PflA506_5250
alr; alanine racemase [KO:
K01775
] [EC:
5.1.1.1
]
PflA506_0689
ddlA; D-alanine--D-alanine ligase [KO:
K01921
] [EC:
6.3.2.4
]
PflA506_0932
ddlB; D-alanine--D-alanine ligase B [KO:
K01921
] [EC:
6.3.2.4
]
PflA506_2713
aspartate racemase [KO:
K25316
] [EC:
5.1.1.10
]
PflA506_3055
glsA; glutaminase A [KO:
K01425
] [EC:
3.5.1.2
]
PflA506_3470
ansB; glutaminase-asparaginase [KO:
K05597
] [EC:
3.5.1.38
]
PflA506_0729
murI; glutamate racemase [KO:
K01776
] [EC:
5.1.1.3
]
PflA506_0928
murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [KO:
K01925
] [EC:
6.3.2.9
]
PflA506_2392
hypothetical protein [KO:
K01753
] [EC:
4.3.1.18
]
PflA506_0248
dcyD; D-cysteine desulfhydrase [KO:
K05396
] [EC:
4.4.1.15
]
PflA506_2328
dapF_1; diaminopimelate epimerase [KO:
K01778
] [EC:
5.1.1.7
]
PflA506_5231
dapF_2; diaminopimelate epimerase [KO:
K01778
] [EC:
5.1.1.7
]
PflA506_2000
putative diaminopimelate epimerase [KO:
K01778
] [EC:
5.1.1.7
]
PflA506_5230
lysA; diaminopimelate decarboxylase [KO:
K01586
] [EC:
4.1.1.20
]
PflA506_2227
oxidoreductase, FAD dependent [KO:
K19746
] [EC:
1.4.99.6
]
PflA506_2228
ornithine cyclodeaminase family protein [KO:
K19744
] [EC:
1.4.1.25
]
PflA506_2818
proline racemase family protein [KO:
K12658
] [EC:
5.1.1.8
]
PflA506_2821
FAD dependent oxidoreductase [KO:
K21060
] [EC:1.5.99.-]
PflA506_2819
dihydrodipicolinate synthetase family protein [KO:
K21062
] [EC:
3.5.4.22
]
PflA506_2820
aldH_2; NADP-dependent fatty aldehyde dehydrogenase [KO:
K13877
] [EC:
1.2.1.26
]
PflA506_2248
aldH_1; NADP-dependent fatty aldehyde dehydrogenase [KO:
K13877
] [EC:
1.2.1.26
]
PflA506_5030
FAD dependent oxidoreductase [KO:
K00285
] [EC:
1.4.5.1
]
PflA506_5252
dadA; D-amino acid dehydrogenase, small subunit [KO:
K00285
] [EC:
1.4.5.1
]
Compound
C00022
Pyruvate
C00025
L-Glutamate
C00026
2-Oxoglutarate
C00036
Oxaloacetate
C00037
Glycine
C00041
L-Alanine
C00047
L-Lysine
C00049
L-Aspartate
C00062
L-Arginine
C00064
L-Glutamine
C00065
L-Serine
C00073
L-Methionine
C00077
L-Ornithine
C00079
L-Phenylalanine
C00084
Acetaldehyde
C00097
L-Cysteine
C00133
D-Alanine
C00134
Putrescine
C00135
L-Histidine
C00148
L-Proline
C00166
Phenylpyruvate
C00188
L-Threonine
C00217
D-Glutamate
C00402
D-Aspartate
C00431
5-Aminopentanoate
C00433
2,5-Dioxopentanoate
C00515
D-Ornithine
C00624
N-Acetyl-L-glutamate
C00666
LL-2,6-Diaminoheptanedioate
C00680
meso-2,6-Diaminoheptanedioate
C00692
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
C00739
D-Lysine
C00740
D-Serine
C00763
D-Proline
C00792
D-Arginine
C00793
D-Cysteine
C00819
D-Glutamine
C00820
D-Threonine
C00855
D-Methionine
C00993
D-Alanyl-D-alanine
C01110
5-Amino-2-oxopentanoic acid
C01157
Hydroxyproline
C01180
4-Methylthio-2-oxobutanoic acid
C01667
Bacitracin
C01672
Cadaverine
C01726
D-Lombricine
C02237
5-Oxo-D-proline
C02265
D-Phenylalanine
C02855
N-Phospho-D-lombricine
C03239
6-Amino-2-oxohexanoate
C03341
2-Amino-4-oxopentanoic acid
C03440
cis-4-Hydroxy-D-proline
C03564
1-Pyrroline-2-carboxylate
C03771
5-Guanidino-2-oxopentanoate
C03933
5-D-Glutamyl-D-glutamyl-peptide
C03943
(2R,4S)-2,4-Diaminopentanoate
C04260
O-D-Alanyl-poly(ribitol phosphate)
C04282
1-Pyrroline-4-hydroxy-2-carboxylate
C04457
D-Alanyl-alanyl-poly(glycerolphosphate)
C05161
(2R,5S)-2,5-Diaminohexanoate
C05620
N-Acetyl-D-phenylalanine
C05825
2-Amino-5-oxohexanoate
C05939
Linatine
C05941
2-Oxo-4-hydroxy-5-aminovalerate
C05942
Pyrrole-2-carboxylate
C06419
D-Histidine
C22024
Staphylopine
C22025
(2S)-2-Amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate
C22611
N-Acetyl-D-glutamate
Reference
PMID:
33788945
Authors
Miyamoto T, Homma H
Title
D-Amino acid metabolism in bacteria.
Journal
J Biochem 170:5-13 (2021)
DOI:
10.1093/jb/mvab043
Reference
PMID:
27230378
Authors
Ghssein G, Brutesco C, Ouerdane L, Fojcik C, Izaute A, Wang S, Hajjar C, Lobinski R, Lemaire D, Richaud P, Voulhoux R, Espaillat A, Cava F, Pignol D, Borezee-Durant E, Arnoux P
Title
Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus.
Journal
Science 352:1105-9 (2016)
DOI:
10.1126/science.aaf1018
Related
pathway
pfc00010
Glycolysis / Gluconeogenesis
pfc00020
Citrate cycle (TCA cycle)
pfc00250
Alanine, aspartate and glutamate metabolism
pfc00260
Glycine, serine and threonine metabolism
pfc00270
Cysteine and methionine metabolism
pfc00300
Lysine biosynthesis
pfc00310
Lysine degradation
pfc00330
Arginine and proline metabolism
pfc00340
Histidine metabolism
pfc00360
Phenylalanine metabolism
pfc00550
Peptidoglycan biosynthesis
pfc00620
Pyruvate metabolism
KO pathway
ko00470
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