KEGG   PATHWAY: pgeo03082
Entry
pgeo03082                   Pathway                                
Name
ATP-dependent chromatin remodeling - Pseudochaenichthys georgianus (South Georgia icefish)
Class
Genetic Information Processing; Chromosome
Pathway map
pgeo03082  ATP-dependent chromatin remodeling
pgeo03082

Organism
Pseudochaenichthys georgianus (South Georgia icefish) [GN:pgeo]
Gene
117448961  smarca5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [KO:K11654] [EC:5.6.2.-]
117457142  baz1b; tyrosine-protein kinase BAZ1B isoform X1 [KO:K11658]
117450005  baz2a; bromodomain adjacent to zinc finger domain protein 2A [KO:K15224]
117465599  LOW QUALITY PROTEIN: bromodomain adjacent to zinc finger domain protein 2B-like [KO:K26167]
117466481  bromodomain adjacent to zinc finger domain protein 2B isoform X1 [KO:K26167]
117455516  chrac1; chromatin accessibility complex protein 1 [KO:K11656]
117463398  pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
117458570  rsf1b.1; remodeling and spacing factor 1 [KO:K11657]
117457497  rsf1a; LOW QUALITY PROTEIN: remodeling and spacing factor 1 [KO:K11657]
117452720  nucleosome-remodeling factor subunit BPTF-like [KO:K11728]
117466031  histone-binding protein RBBP7 [KO:K10752]
117467843  histone-binding protein RBBP4 isoform X1 [KO:K10752]
117454933  rbbp4; histone-binding protein RBBP4 isoform X1 [KO:K10752]
117463728  zgc:92664; chromatin complexes subunit BAP18 isoform X1 [KO:K23406]
117448160  cat eye syndrome critical region protein 2 homolog [KO:K25830]
117463476  chd3; chromodomain-helicase-DNA-binding protein 3 isoform X1 [KO:K11642] [EC:5.6.2.-]
117460325  chd4b; chromodomain-helicase-DNA-binding protein 4 isoform X1 [KO:K11643] [EC:5.6.2.-]
117454832  chd4a; chromodomain-helicase-DNA-binding protein 4a isoform X1 [KO:K11643] [EC:5.6.2.-]
117467778  probable histone deacetylase 1-B [KO:K06067] [EC:3.5.1.98]
117454901  LOW QUALITY PROTEIN: probable histone deacetylase 1-B [KO:K06067] [EC:3.5.1.98]
117462006  mbd3a; methyl-CpG-binding domain protein 3a [KO:K11591]
117445291  mbd3b; methyl-CpG-binding domain protein 3b isoform X1 [KO:K11591]
117467872  mta1; metastasis-associated protein MTA1 [KO:K11660]
117463640  mta2; metastasis-associated protein MTA2 isoform X1 [KO:K11660]
117464448  mta3; metastasis-associated protein MTA3 isoform X1 [KO:K11660]
117462314  transcriptional repressor p66 alpha-like isoform X1 [KO:K23194]
117455018  gatad2b; transcriptional repressor p66-beta isoform X1 [KO:K23194]
117445300  gatad2ab; GATA zinc finger domain containing 2Ab isoform X1 [KO:K23194]
117454419  phf6; PHD finger protein 6 [KO:K23310]
117456124  cyclin-dependent kinase 2-associated protein 1 isoform X1 [KO:K26454]
117453581  cdk2ap2; cyclin-dependent kinase 2-associated protein 2 [KO:K26455]
117450824  LOW QUALITY PROTEIN: transcription activator BRG1-like [KO:K11647] [EC:5.6.2.-]
117446140  transcription activator BRG1 isoform X1 [KO:K11647] [EC:5.6.2.-]
117452891  smarca2; probable global transcription activator SNF2L2 [KO:K11647] [EC:5.6.2.-]
117456230  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like [KO:K11648]
117453040  smarcb1a; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A [KO:K11648]
117460786  smarcc1a; SWI/SNF complex subunit SMARCC1 isoform X1 [KO:K11649]
117454937  smarcc1b; SWI/SNF complex subunit SMARCC1b isoform X1 [KO:K11649]
117446898  smarcc2; SWI/SNF complex subunit SMARCC2 isoform X1 [KO:K11649]
117465951  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1 [KO:K11650]
117464841  smarcd2; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 [KO:K11650]
117446821  smarcd1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 isoform X1 [KO:K11650]
117455740  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like isoform X1 [KO:K11651]
117451254  LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like [KO:K11651]
117447644  actb1; actin, cytoplasmic 1 [KO:K05692]
117451022  actin, cytoplasmic 1-like [KO:K05692]
117451156  actin, cytoplasmic 1-like [KO:K05692]
117451232  actin, cytoplasmic 1-like [KO:K05692]
117451766  actin, cytoplasmic 1 [KO:K05692]
117451768  actin, cytoplasmic 1-like [KO:K05692]
117445294  actl6a; actin-like protein 6A [KO:K11340]
117456238  bcl7a; B-cell CLL/lymphoma 7 protein family member A [KO:K25605]
117457434  bcl7bb; B-cell CLL/lymphoma 7 protein family member B-B [KO:K25605]
117462272  ss18; protein SSXT [KO:K15623]
117449026  calcium-responsive transactivator-like isoform X1 [KO:K15623]
117460869  arid1aa; LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1A [KO:K11653]
117467805  arid1b; AT-rich interactive domain-containing protein 1B [KO:K11653]
117454923  AT-rich interactive domain-containing protein 1A-like isoform X1 [KO:K11653]
117468110  zinc finger protein DPF3-like [KO:K22198]
117439451  dpf3; LOW QUALITY PROTEIN: zinc finger protein DPF3 [KO:K22198]
117456931  dpf1; zinc finger protein neuro-d4 [KO:K22198]
117458583  dpf2; zinc finger protein ubi-d4 isoform X1 [KO:K13196]
117453662  dpf2l; D4, zinc and double PHD fingers family 2, like isoform X1 [KO:K13196]
117468455  arid2; AT-rich interactive domain-containing protein 2 [KO:K11765]
117447127  protein polybromo-1-like isoform X1 [KO:K11757]
117447218  pbrm1l; polybromo 1, like [KO:K11757]
117441146  brd7; bromodomain-containing protein 7 isoform X1 [KO:K11723]
117439584  phf10; PHD finger protein 10 [KO:K22197]
117460514  brd9; bromodomain-containing protein 9 isoform X1 [KO:K22184]
117457077  bicra; BRD4-interacting chromatin-remodeling complex-associated protein isoform X1 [KO:K25612]
117464360  bicral; BRD4-interacting chromatin-remodeling complex-associated protein-like [KO:K25613]
117439849  ino80; LOW QUALITY PROTEIN: chromatin-remodeling ATPase INO80 [KO:K11665] [EC:5.6.2.-]
117463546  ino80b; INO80 complex subunit B isoform X1 [KO:K11666]
117461042  ino80c; INO80 complex subunit C [KO:K11667]
117466559  INO80 complex subunit D [KO:K11668]
117460834  ino80e; INO80 complex subunit E isoform X1 [KO:K11669]
117460889  tfpt; TCF3 fusion partner [KO:K11670]
117458998  nfrkb; nuclear factor related to kappa-B-binding protein isoform X1 [KO:K11671]
117446640  mcrs1; microspherule protein 1 [KO:K11674]
117445953  uchl5; ubiquitin carboxyl-terminal hydrolase isozyme L5 [KO:K05610] [EC:3.4.19.12]
117446206  ruvbl1; ruvB-like 1 [KO:K04499] [EC:5.6.2.4]
117459021  ruvbl2; ruvB-like 2 [KO:K11338] [EC:5.6.2.3]
117448993  actr5; actin-related protein 5 [KO:K11672]
117449510  actr8; actin-related protein 8 [KO:K11673]
117467393  yy1a; transcriptional repressor protein YY1a [KO:K09201]
117439720  yy1b; transcriptional repressor protein YY1b isoform X1 [KO:K09201]
117464343  srcap; mucin-17 isoform X1 [KO:K11661] [EC:5.6.2.-]
117445856  dmap1; DNA methyltransferase 1-associated protein 1 isoform X1 [KO:K11324]
117439117  yeats4; YEATS domain-containing protein 4 [KO:K11341]
117455082  vps72a; vacuolar protein sorting 72 homolog a isoform X1 [KO:K11664]
117461910  histone H2A-like [KO:K11251]
117461911  late histone H2A.L3-like [KO:K11251]
117461913  histone H2A [KO:K11251]
117461914  histone H2A [KO:K11251]
117461915  late histone H2A.L3-like [KO:K11251]
117461916  late histone H2A.L3-like [KO:K11251]
117461917  histone H2A [KO:K11251]
117461919  late histone H2A.L3-like [KO:K11251]
117461920  late histone H2A.L3-like [KO:K11251]
117461950  late histone H2A.L3-like [KO:K11251]
117461951  late histone H2A.L3-like [KO:K11251]
117461952  late histone H2A.L3-like [KO:K11251]
117461953  late histone H2A.L3-like [KO:K11251]
117463735  histone H2A.Z [KO:K11251]
117458367  histone H2A [KO:K11251]
117458368  histone H2A [KO:K11251]
117458370  histone H2A-like [KO:K11251]
117458544  histone H2A-like [KO:K11251]
117458545  histone H2A-like [KO:K11251]
117458551  histone H2A-like [KO:K11251]
117458556  histone H2A-like [KO:K11251]
117458675  LOW QUALITY PROTEIN: core histone macro-H2A.1 [KO:K11251]
117458730  histone H2A [KO:K11251]
117458731  histone H2A [KO:K11251]
117458732  histone H2A [KO:K11251]
117458733  histone H2A [KO:K11251]
117459058  histone H2A-like [KO:K11251]
117459111  histone H2AX [KO:K11251]
117457578  late histone H2A.2.2-like [KO:K11251]
117457579  late histone H2A.2.2-like [KO:K11251]
117457580  late histone H2A.2.2-like [KO:K11251]
117442117  histone H2A-like isoform X1 [KO:K11251]
117442145  histone H2A-like [KO:K11251]
117442146  histone H2A [KO:K11251]
117442147  late histone H2A.L3 [KO:K11251]
117442148  histone H2A-like [KO:K11251]
117442149  late histone H2A.L3-like [KO:K11251]
117442150  late histone H2A.L3-like [KO:K11251]
117442151  late histone H2A.L3-like [KO:K11251]
117442152  histone H2A-like [KO:K11251]
117442153  late histone H2A.L3 [KO:K11251]
117442154  late histone H2A.L3-like [KO:K11251]
117442156  histone H2A-like [KO:K11251]
117442157  histone H2A-like [KO:K11251]
117442158  late histone H2A.L3-like [KO:K11251]
117442159  late histone H2A.L3-like [KO:K11251]
117442160  histone H2A-like [KO:K11251]
117442179  late histone H2A.L3-like [KO:K11251]
117442180  late histone H2A.L3-like [KO:K11251]
117442181  late histone H2A.L3-like [KO:K11251]
117453049  histone H2A.V [KO:K11251]
117444819  actr6; actin-related protein 6 [KO:K11662]
117452056  ep400; LOW QUALITY PROTEIN: E1A-binding protein p400 [KO:K11320] [EC:5.6.2.-]
117464706  trrap; transformation/transcription domain-associated protein isoform X1 [KO:K08874]
117464828  mortality factor 4-like protein 1 [KO:K11339]
117448077  morf4l1; mortality factor 4-like protein 1 [KO:K11339]
117449918  mrgbp; MRG/MORF4L-binding protein [KO:K11343]
117453835  LOW QUALITY PROTEIN: bromodomain-containing protein 8 [KO:K11321]
117458167  bromodomain-containing protein 8 isoform X1 [KO:K11321]
117465641  enhancer of polycomb homolog 1-like isoform X1 [KO:K11322]
117462234  enhancer of polycomb homolog 1-like isoform X1 [KO:K11322]
117455573  meaf6; chromatin modification-related protein MEAF6 isoform X1 [KO:K11344]
117458782  histone acetyltransferase KAT5 isoform X1 [KO:K11304] [EC:2.3.1.48]
Reference
PMID:31769422
  Authors
Hasan N, Ahuja N
  Title
The Emerging Roles of ATP-Dependent Chromatin Remodeling Complexes in Pancreatic Cancer.
  Journal
Cancers (Basel) 11:cancers11121859 (2019)
DOI:10.3390/cancers11121859
Reference
PMID:32001526
  Authors
He S, Wu Z, Tian Y, Yu Z, Yu J, Wang X, Li J, Liu B, Xu Y
  Title
Structure of nucleosome-bound human BAF complex.
  Journal
Science 367:875-881 (2020)
DOI:10.1126/science.aaz9761
Reference
PMID:33941852
  Authors
Wanior M, Kramer A, Knapp S, Joerger AC
  Title
Exploiting vulnerabilities of SWI/SNF chromatin remodelling complexes for cancer therapy.
  Journal
Oncogene 40:3637-3654 (2021)
DOI:10.1038/s41388-021-01781-x
Reference
PMID:20493981
  Authors
Burgio G, Onorati MC, Corona DF
  Title
Chromatin remodeling regulation by small molecules and metabolites.
  Journal
Biochim Biophys Acta 1799:671-80 (2010)
DOI:10.1016/j.bbagrm.2010.05.007
KO pathway
ko03082   
LinkDB

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