KEGG   PATHWAY: psex03082
Entry
psex03082                   Pathway                                
Name
ATP-dependent chromatin remodeling - Polypterus senegalus (gray bichir)
Class
Genetic Information Processing; Chromosome
Pathway map
psex03082  ATP-dependent chromatin remodeling
psex03082

Organism
Polypterus senegalus (gray bichir) [GN:psex]
Gene
120527113  smarca5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [KO:K11654] [EC:5.6.2.-]
120518361  baz1a; bromodomain adjacent to zinc finger domain protein 1A [KO:K11655]
120531447  baz1b; tyrosine-protein kinase BAZ1B [KO:K11658]
120524813  baz2a; bromodomain adjacent to zinc finger domain protein 2A isoform X1 [KO:K15224]
120531761  bromodomain adjacent to zinc finger domain protein 2B-like isoform X1 [KO:K26167]
120515625  chrac1; chromatin accessibility complex protein 1 [KO:K11656]
120542459  pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
120523184  rsf1a; remodeling and spacing factor 1 isoform X1 [KO:K11657]
120537404  smarca1; probable global transcription activator SNF2L1 isoform X1 [KO:K11727] [EC:5.6.2.-]
120517350  bptf; nucleosome-remodeling factor subunit BPTF isoform X1 [KO:K11728]
120524110  rbb4l; histone-binding protein RBBP7 isoform X1 [KO:K10752]
120518215  rbbp4; histone-binding protein RBBP4 [KO:K10752]
120525263  chromatin complexes subunit BAP18-like isoform X1 [KO:K23406]
120525058  chd3; chromodomain-helicase-DNA-binding protein 3 isoform X1 [KO:K11642] [EC:5.6.2.-]
120535669  chromodomain-helicase-DNA-binding protein 4-like isoform X1 [KO:K11643] [EC:5.6.2.-]
120525557  histone deacetylase 2 [KO:K06067] [EC:3.5.1.98]
120517306  histone deacetylase 1 [KO:K06067] [EC:3.5.1.98]
120527236  methyl-CpG-binding domain protein 2-like isoform X1 [KO:K11590]
120537765  mbd3a; methyl-CpG-binding domain protein 3a isoform X1 [KO:K11591]
120518823  mta1; metastasis-associated protein MTA1 isoform X1 [KO:K11660]
120539320  mta2; metastasis-associated protein MTA2 isoform X1 [KO:K11660]
120539470  metastasis-associated protein MTA1-like isoform X1 [KO:K11660]
120516561  mta3; metastasis-associated protein MTA3 [KO:K11660]
120537616  gatad2ab; GATA zinc finger domain containing 2Ab isoform X1 [KO:K23194]
120528634  gatad2b; transcriptional repressor p66-beta isoform X1 [KO:K23194]
120537332  phf6; PHD finger protein 6 isoform X1 [KO:K23310]
120540866  cyclin-dependent kinase 2-associated protein 1 [KO:K26454]
120538261  cdk2ap2; cyclin-dependent kinase 2-associated protein 2 isoform X1 [KO:K26455]
120532521  smarca2; probable global transcription activator SNF2L2 isoform X1 [KO:K11647] [EC:5.6.2.-]
120541189  smarca4a; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a isoform X1 [KO:K11647] [EC:5.6.2.-]
120540927  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 [KO:K11648]
120516200  smarcc1a; SWI/SNF complex subunit SMARCC1 isoform X1 [KO:K11649]
120526487  smarcc2; SWI/SNF complex subunit SMARCC2 [KO:K11649]
120524918  smarcd1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 [KO:K11650]
120517750  smarcd2; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X1 [KO:K11650]
120529440  smarcd3a; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1 [KO:K11650]
120517080  smarce1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1 [KO:K11651]
120521604  actin, cytoplasmic 2-like isoform X1 [KO:K05692]
120531406  actin, cytoplasmic 2-like [KO:K05692]
120531407  actin, cytoplasmic 3-like [KO:K05692]
120516562  actin, cytoplasmic 2-like isoform X1 [KO:K05692]
120516655  actin, cytoplasmic 2-like [KO:K05692]
120542490  actin, cytoplasmic 2 [KO:K05692]
120517690  actin, cytoplasmic type 5 [KO:K05692]
120532540  actl6a; actin-like protein 6A isoform X1 [KO:K11340]
120525094  actl6b; actin-like protein 6B [KO:K11652]
120531450  bcl7ba; B-cell CLL/lymphoma 7 protein family member B-A [KO:K25605]
120541247  bcl7a; B-cell CLL/lymphoma 7 protein family member A isoform X1 [KO:K25605]
120536647  B-cell CLL/lymphoma 7 protein family member B-like [KO:K25605]
120530305  ss18; protein SSXT isoform X1 [KO:K15623]
120514943  calcium-responsive transactivator-like isoform X1 [KO:K15623]
120525660  arid1b; AT-rich interactive domain-containing protein 1B isoform X1 [KO:K11653]
120517117  arid1aa; AT-rich interactive domain-containing protein 1A isoform X1 [KO:K11653]
120518848  dpf3; zinc finger protein DPF3 isoform X1 [KO:K22198]
120538710  dpf1; zinc finger protein neuro-d4 isoform X1 [KO:K22198]
120539194  zinc finger protein ubi-d4 isoform X1 [KO:K13196]
120533843  arid2; AT-rich interactive domain-containing protein 2 [KO:K11765]
120541385  pbrm1; protein polybromo-1 isoform X1 [KO:K11757]
120535205  brd7; bromodomain-containing protein 7 isoform X1 [KO:K11723]
120525728  phf10; PHD finger protein 10 isoform X1 [KO:K22197]
120515363  brd9; bromodomain-containing protein 9 isoform X1 [KO:K22184]
120538798  bicra; BRD4-interacting chromatin-remodeling complex-associated protein isoform X1 [KO:K25612]
120516511  bicral; LOW QUALITY PROTEIN: BRD4-interacting chromatin-remodeling complex-associated protein-like [KO:K25613]
120518586  ino80; chromatin-remodeling ATPase INO80 isoform X1 [KO:K11665] [EC:5.6.2.-]
120527611  ino80b; INO80 complex subunit B [KO:K11666]
120515786  ino80c; INO80 complex subunit C [KO:K11667]
120531959  ino80db; INO80 complex subunit D-B isoform X1 [KO:K11668]
120539617  ino80e; INO80 complex subunit E isoform X1 [KO:K11669]
120518581  tfpt; TCF3 fusion partner [KO:K11670]
120525220  mcrs1; microspherule protein 1 isoform X1 [KO:K11674]
120514719  uchl5; ubiquitin carboxyl-terminal hydrolase isozyme L5 [KO:K05610] [EC:3.4.19.12]
120542615  ruvbl2; ruvB-like 2 [KO:K11338] [EC:5.6.2.3]
120514564  actr5; actin-related protein 5 [KO:K11672]
120518341  transcriptional repressor protein YY1-like isoform X1 [KO:K09201]
120515158  dmap1; DNA methyltransferase 1-associated protein 1 [KO:K11324]
120539588  yeats4; YEATS domain-containing protein 4 [KO:K11341]
120517587  YEATS domain-containing protein 4-like [KO:K11341]
120527389  vps72b; vacuolar protein sorting-associated protein 72 homolog [KO:K11664]
120519306  histone H2A-like [KO:K11251]
120538118  histone H2A-like [KO:K11251]
120538335  histone H2A-like [KO:K11251]
120538337  histone H2A-like [KO:K11251]
120538341  histone H2A-like [KO:K11251]
120538361  histone H2A-like [KO:K11251]
120521067  histone H2A-like [KO:K11251]
120530671  core histone macro-H2A.2 isoform X1 [KO:K11251]
120538822  histone H2A.V [KO:K11251]
120514479  histone H2A-like [KO:K11251]
120524249  late histone H2A.2.2-like [KO:K11251]
120524250  late histone H2A.2.2-like [KO:K11251]
120514639  histone H2A-like [KO:K11251]
120514654  histone H2A-like [KO:K11251]
120514655  histone H2A-like [KO:K11251]
120514656  histone H2A [KO:K11251]
120514657  histone H2A-like [KO:K11251]
120514658  histone H2A-like [KO:K11251]
120514659  histone H2A-like [KO:K11251]
120514660  histone H2A-like [KO:K11251]
120514661  histone H2A-like [KO:K11251]
120514802  histone H2A-like [KO:K11251]
120532796  histone H2A.Z [KO:K11251]
120515101  histone H2A-like [KO:K11251]
120515105  histone H2A-like [KO:K11251]
120515131  histone H2A-like [KO:K11251]
120515133  histone H2A-like [KO:K11251]
120533339  histone H2A-like [KO:K11251]
120533340  histone H2A-like [KO:K11251]
120533341  histone H2A-like [KO:K11251]
120533342  histone H2A-like [KO:K11251]
120533343  histone H2A-like [KO:K11251]
120533344  histone H2A-like [KO:K11251]
120533345  histone H2A-like [KO:K11251]
120515815  histone H2A-like [KO:K11251]
120515816  histone H2A-like [KO:K11251]
120515820  histone H2A-like isoform X1 [KO:K11251]
120515822  histone H2A-like [KO:K11251]
120515823  histone H2A-like [KO:K11251]
120515824  histone H2A-like [KO:K11251]
120541925  core histone macro-H2A.1 isoform X1 [KO:K11251]
120535703  histone H2A-like [KO:K11251]
120543517  histone H2A-like [KO:K11251]
120543518  histone H2A-like [KO:K11251]
120543519  histone H2A-like [KO:K11251]
120543520  histone H2A-like [KO:K11251]
120535922  histone H2A [KO:K11251]
120536317  histone H2A-like [KO:K11251]
120536322  histone H2A-like [KO:K11251]
120536326  histone H2A-like [KO:K11251]
120525080  znhit1; zinc finger HIT domain-containing protein 1 [KO:K11663]
120540889  ep400; E1A-binding protein p400 isoform X1 [KO:K11320] [EC:5.6.2.-]
120543357  transformation/transcription domain-associated protein [KO:K08874]
120541513  morf4l1; mortality factor 4-like protein 1 isoform X1 [KO:K11339]
120514427  MRG/MORF4L-binding protein isoform X1 [KO:K11343]
120543372  brd8a; bromodomain-containing protein 8 isoform X1 [KO:K11321]
120534008  ing3; inhibitor of growth protein 3 [KO:K11319]
120531701  epc2; enhancer of polycomb homolog 2 isoform X1 [KO:K11322]
120529745  epc1a; enhancer of polycomb homolog 1 isoform X1 [KO:K11322]
120517490  meaf6; chromatin modification-related protein MEAF6 isoform X1 [KO:K11344]
120539277  histone acetyltransferase KAT5 isoform X1 [KO:K11304] [EC:2.3.1.48]
Reference
PMID:31769422
  Authors
Hasan N, Ahuja N
  Title
The Emerging Roles of ATP-Dependent Chromatin Remodeling Complexes in Pancreatic Cancer.
  Journal
Cancers (Basel) 11:cancers11121859 (2019)
DOI:10.3390/cancers11121859
Reference
PMID:32001526
  Authors
He S, Wu Z, Tian Y, Yu Z, Yu J, Wang X, Li J, Liu B, Xu Y
  Title
Structure of nucleosome-bound human BAF complex.
  Journal
Science 367:875-881 (2020)
DOI:10.1126/science.aaz9761
Reference
PMID:33941852
  Authors
Wanior M, Kramer A, Knapp S, Joerger AC
  Title
Exploiting vulnerabilities of SWI/SNF chromatin remodelling complexes for cancer therapy.
  Journal
Oncogene 40:3637-3654 (2021)
DOI:10.1038/s41388-021-01781-x
Reference
PMID:20493981
  Authors
Burgio G, Onorati MC, Corona DF
  Title
Chromatin remodeling regulation by small molecules and metabolites.
  Journal
Biochim Biophys Acta 1799:671-80 (2010)
DOI:10.1016/j.bbagrm.2010.05.007
KO pathway
ko03082   
LinkDB

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