KEGG   PATHWAY: smeo03030
Entry
smeo03030                   Pathway                                
Name
DNA replication - Silurus meridionalis (southern catfish)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
smeo03030  DNA replication
smeo03030

Organism
Silurus meridionalis (southern catfish) [GN:smeo]
Gene
124376501  mcm3; DNA replication licensing factor MCM3 isoform X1 [KO:K02541] [EC:5.6.2.3]
124376662  prim2; DNA primase large subunit [KO:K02685]
124376758  rnaseh1; ribonuclease H1 isoform X1 [KO:K03469] [EC:3.1.26.4]
124377202  mcm3l; MCM3 minichromosome maintenance deficient 3 (S. cerevisiae), like isoform X1 [KO:K02541] [EC:5.6.2.3]
124377807  rnaseh2a; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
124378924  pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
124380506  rfc5; LOW QUALITY PROTEIN: replication factor C subunit 5 [KO:K10756]
124380869  pole; LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
124381558  rfc1; replication factor C subunit 1 [KO:K10754]
124382249  rpa3; replication protein A 14 kDa subunit [KO:K10740]
124383296  rnaseh2b; ribonuclease H2 subunit B isoform X1 [KO:K10744]
124384019  fen1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
124384984  rpa2; LOW QUALITY PROTEIN: replication protein A 32 kDa subunit [KO:K10739]
124385344  mcm4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
124385900  rnaseh2c; ribonuclease H2 subunit C isoform X1 [KO:K10745]
124391302  rfc4; replication factor C subunit 4 [KO:K10755]
124391650  pole4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
124392536  mcm6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
124393043  pcna; proliferating cell nuclear antigen [KO:K04802]
124393887  rfc3; replication factor C subunit 3 [KO:K10756]
124394844  rpa1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
124396348  mcm5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
124397186  mcm7; DNA replication licensing factor MCM7 [KO:K02210] [EC:5.6.2.3]
124397338  pold1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
124397551  rfc2; replication factor C subunit 2 [KO:K10755]
124398151  dna2; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
124398490  pold3; DNA polymerase delta subunit 3 [KO:K03504]
124398780  prim1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
124399328  pold4; DNA polymerase delta subunit 4 [KO:K03505]
124399582  pold2; DNA polymerase delta subunit 2 [KO:K02328]
124399690  pola2; DNA polymerase alpha subunit B [KO:K02321]
124400763  ssbp1; single-stranded DNA-binding protein, mitochondrial isoform X1 [KO:K03111]
124402540  mcm2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
124402677  mcm6l; MCM6 minichromosome maintenance deficient 6, like [KO:K02542] [EC:5.6.2.3]
124402840  zgc:110269; probable flap endonuclease 1 homolog [KO:K04799] [EC:3.1.-.-]
124403373  lig1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
124403817  pola1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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