KEGG   PATHWAY: tpf03040
Entry
tpf03040                    Pathway                                
Name
Spliceosome - Tetrapisispora phaffii
Description
After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.
Class
Genetic Information Processing; Transcription
Pathway map
tpf03040  Spliceosome
tpf03040

Other DBs
GO: 0005681
Organism
Tetrapisispora phaffii [GN:tpf]
Gene
TPHA_0A00160  TPHA0A00160; hypothetical protein [KO:K12627]
TPHA_0A00850  TPHA0A00850; hypothetical protein [KO:K11087]
TPHA_0A00910  TPHA0A00910; hypothetical protein [KO:K12827]
TPHA_0A01450  TPHA0A01450; hypothetical protein [KO:K12863]
TPHA_0A02000  TPHA0A02000; hypothetical protein [KO:K12819]
TPHA_0A02370  TPHA0A02370; hypothetical protein [KO:K12859]
TPHA_0A02740  TPHA0A02740; hypothetical protein [KO:K12853]
TPHA_0A03330  TPHA0A03330; hypothetical protein [KO:K12834]
TPHA_0A05280  TPHA0A05280; hypothetical protein [KO:K12856]
TPHA_0A05400  TPHA0A05400; hypothetical protein [KO:K12828]
TPHA_0B00530  TPHA0B00530; hypothetical protein [KO:K12622]
TPHA_0B02590  TPHA0B02590; hypothetical protein [KO:K12820] [EC:3.6.4.13]
TPHA_0B02930  TPHA0B02930; hypothetical protein [KO:K12823] [EC:3.6.4.13]
TPHA_0B03360  TPHA0B03360; hypothetical protein [KO:K12854] [EC:3.6.4.13]
TPHA_0B04030  TPHA0B04030; small nucleolar ribonucleoprotein SNU13 [KO:K12845]
TPHA_0B04250  TPHA0B04250; hypothetical protein [KO:K12880]
TPHA_0C00440  TPHA0C00440; hypothetical protein [KO:K12843]
TPHA_0C00590  TPHA0C00590; hypothetical protein [KO:K11088]
TPHA_0C00900  TPHA0C00900; hypothetical protein [KO:K12869]
TPHA_0C01560  TPHA0C01560; hypothetical protein [KO:K12818] [EC:3.6.4.13]
TPHA_0C01860  TPHA0C01860; hypothetical protein [KO:K12858] [EC:3.6.4.13]
TPHA_0C02850  TPHA0C02850; hypothetical protein [KO:K12621]
TPHA_0C04920  TPHA0C04920; hypothetical protein [KO:K12836]
TPHA_0D00530  TPHA0D00530; hypothetical protein [KO:K11099]
TPHA_0D03410  TPHA0D03410; hypothetical protein [KO:K11086]
TPHA_0D03700  TPHA0D03700; hypothetical protein [KO:K12814] [EC:3.6.4.13]
TPHA_0D03890  TPHA0D03890; hypothetical protein [KO:K12873]
TPHA_0D03930  TPHA0D03930; hypothetical protein [KO:K12844]
TPHA_0D04330  TPHA0D04330; hypothetical protein [KO:K12624]
TPHA_0D04470  TPHA0D04470; hypothetical protein [KO:K12825]
TPHA_0E00830  TPHA0E00830; hypothetical protein [KO:K03283]
TPHA_0E01590  TPHA0E01590; hypothetical protein [KO:K12881]
TPHA_0E01630  TPHA0E01630; hypothetical protein [KO:K12625]
TPHA_0E01790  TPHA0E01790; hypothetical protein [KO:K12816]
TPHA_0E02010  TPHA0E02010; hypothetical protein [KO:K12867]
TPHA_0E02070  TPHA0E02070; hypothetical protein [KO:K11097]
TPHA_0F00240  TPHA0F00240; hypothetical protein [KO:K10599] [EC:2.3.2.27]
TPHA_0F02000  TPHA0F02000; hypothetical protein [KO:K12832]
TPHA_0F03460  TPHA0F03460; hypothetical protein [KO:K12830]
TPHA_0G01080  TPHA0G01080; hypothetical protein [KO:K12831]
TPHA_0G01170  TPHA0G01170; hypothetical protein [KO:K11984]
TPHA_0G01180  TPHA0G01180; hypothetical protein [KO:K12829]
TPHA_0G01400  TPHA0G01400; hypothetical protein [KO:K12860]
TPHA_0G01610  TPHA0G01610; hypothetical protein [KO:K12862]
TPHA_0G01920  TPHA0G01920; hypothetical protein [KO:K12848]
TPHA_0G02050  TPHA0G02050; hypothetical protein [KO:K12812] [EC:3.6.4.13]
TPHA_0G02350  TPHA0G02350; hypothetical protein [KO:K12882]
TPHA_0G02585  TPHA0G02585; hypothetical protein [KO:K12812] [EC:3.6.4.13]
TPHA_0G02740  TPHA0G02740; hypothetical protein [KO:K12882]
TPHA_0I01310  TPHA0I01310; hypothetical protein [KO:K12626]
TPHA_0I01340  TPHA0I01340; hypothetical protein [KO:K12879]
TPHA_0I03240  TPHA0I03240; hypothetical protein [KO:K12662]
TPHA_0I03270  TPHA0I03270; hypothetical protein [KO:K11098]
TPHA_0J00920  TPHA0J00920; hypothetical protein [KO:K11093]
TPHA_0J01510  TPHA0J01510; hypothetical protein [KO:K12815] [EC:3.6.4.13]
TPHA_0J02110  TPHA0J02110; hypothetical protein [KO:K12883]
TPHA_0J02460  TPHA0J02460; hypothetical protein [KO:K11092]
TPHA_0J02700  TPHA0J02700; hypothetical protein [KO:K12881]
TPHA_0K00740  TPHA0K00740; hypothetical protein [KO:K12623]
TPHA_0K01040  TPHA0K01040; hypothetical protein [KO:K11095]
TPHA_0K01130  TPHA0K01130; hypothetical protein [KO:K11096]
TPHA_0K01440  TPHA0K01440; hypothetical protein [KO:K12817]
TPHA_0K02090  TPHA0K02090; hypothetical protein [KO:K03283]
TPHA_0L01880  TPHA0L01880; hypothetical protein [KO:K12837]
TPHA_0L02020  TPHA0L02020; hypothetical protein [KO:K12821]
TPHA_0M00400  TPHA0M00400; hypothetical protein [KO:K12826]
TPHA_0M00510  TPHA0M00510; hypothetical protein [KO:K12851]
TPHA_0M00900  TPHA0M00900; hypothetical protein [KO:K13025] [EC:3.6.4.13]
TPHA_0M01050  TPHA0M01050; hypothetical protein [KO:K12855]
TPHA_0M01170  TPHA0M01170; hypothetical protein [KO:K12872]
TPHA_0N00470  TPHA0N00470; hypothetical protein [KO:K06063]
TPHA_0N01130  TPHA0N01130; hypothetical protein [KO:K12811] [EC:3.6.4.13]
TPHA_0O00480  TPHA0O00480; hypothetical protein [KO:K12870]
TPHA_0O01770  TPHA0O01770; hypothetical protein [KO:K03283]
TPHA_0P00460  TPHA0P00460; hypothetical protein [KO:K12847]
TPHA_0P01620  TPHA0P01620; hypothetical protein [KO:K03283]
Reference
  Authors
Wahl MC, Will CL, Luhrmann R
  Title
The spliceosome: design principles of a dynamic RNP machine.
  Journal
Cell 136:701-18 (2009)
DOI:10.1016/j.cell.2009.02.009
Reference
  Authors
Morris DP, Greenleaf AL
  Title
The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.
  Journal
J Biol Chem 275:39935-43 (2000)
DOI:10.1074/jbc.M004118200
Reference
  Authors
Chen YI, Moore RE, Ge HY, Young MK, Lee TD, Stevens SW
  Title
Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.
  Journal
Nucleic Acids Res 35:3928-44 (2007)
DOI:10.1093/nar/gkm347
Reference
  Authors
Ritchie DB, Schellenberg MJ, MacMillan AM
  Title
Spliceosome structure: piece by piece.
  Journal
Biochim Biophys Acta 1789:624-33 (2009)
DOI:10.1016/j.bbagrm.2009.08.010
KO pathway
ko03040   

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