KEGG   PATHWAY: zof00510
Entry
zof00510                    Pathway                                
Name
N-Glycan biosynthesis - Zingiber officinale (ginger)
Description
N-glycans or asparagine-linked glycans are major constituents of glycoproteins in eukaryotes. N-glycans are covalently attached to asparagine with the consensus sequence of Asn-X-Ser/Thr by an N-glycosidic bond, GlcNAc b1- Asn. Biosynthesis of N-glycans begins on the cytoplasmic face of the ER membrane with the transferase reaction of UDP-GlcNAc and the lipid-like precursor P-Dol (dolichol phosphate) to generate GlcNAc a1- PP-Dol. After sequential addition of monosaccharides by ALG glycosyltransferases [MD:M00055], the N-glycan precursor is attached by the OST (oligosaccharyltransferase) complex to the polypeptide chain that is being synthesized and translocated through the ER membrane. The protein-bound N-glycan precursor is subsequently trimmed, extended, and modified in the ER and Golgi by a complex series of reactions catalyzed by membrane-bound glycosidases and glycosyltransferases. N-glycans thus synthesized are classified into three types: high-mannose type, complex type, and hybrid type. Defects in N-glycan biosynthesis lead to a variety of human diseases known as congenital disorders of glycosylation [DS:H00118 H00119].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
zof00510  N-Glycan biosynthesis
zof00510

Module
zof_M00055  N-glycan precursor biosynthesis [PATH:zof00510]
zof_M00073  N-glycan precursor trimming [PATH:zof00510]
Other DBs
GO: 0006487
Organism
Zingiber officinale (ginger) [GN:zof]
Gene
122045611  polyprenol reductase 1-like [KO:K12345] [EC:1.3.1.22 1.3.1.94]
122041106  polyprenol reductase 1-like [KO:K12345] [EC:1.3.1.22 1.3.1.94]
122004925  dolichol kinase EVAN-like isoform X1 [KO:K00902] [EC:2.7.1.108]
122000639  dolichol kinase EVAN-like isoform X1 [KO:K00902] [EC:2.7.1.108]
121976451  UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase-like [KO:K01001] [EC:2.7.8.15]
121980906  UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase-like [KO:K01001] [EC:2.7.8.15]
121984796  UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase-like [KO:K01001] [EC:2.7.8.15]
121971217  UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase-like isoform X1 [KO:K01001] [EC:2.7.8.15]
122045056  dolichyl-phosphate beta-glucosyltransferase-like isoform X1 [KO:K00729] [EC:2.4.1.117]
122040524  dolichyl-phosphate beta-glucosyltransferase-like [KO:K00729] [EC:2.4.1.117]
122047274  UDP-N-acetylglucosamine transferase subunit ALG13 homolog [KO:K07432] [EC:2.4.1.141]
121980760  UDP-N-acetylglucosamine transferase subunit ALG13 homolog [KO:K07432] [EC:2.4.1.141]
121984658  UDP-N-acetylglucosamine transferase subunit ALG13 homolog [KO:K07432] [EC:2.4.1.141]
122042735  UDP-N-acetylglucosamine transferase subunit ALG14-like isoform X1 [KO:K07441] [EC:2.4.1.141]
122047250  UDP-N-acetylglucosamine transferase subunit ALG14-like isoform X1 [KO:K07441] [EC:2.4.1.141]
122018739  dolichol-phosphate mannosyltransferase subunit 1-like isoform X1 [KO:K00721] [EC:2.4.1.83]
121992818  dolichol-phosphate mannosyltransferase subunit 1 [KO:K00721] [EC:2.4.1.83]
121996789  dolichol-phosphate mannosyltransferase subunit 1-like [KO:K00721] [EC:2.4.1.83]
122024029  dolichol-phosphate mannosyltransferase subunit 1-like isoform X1 [KO:K00721] [EC:2.4.1.83]
121975555  dolichol-phosphate mannose synthase subunit 2-like [KO:K09658]
121973526  dolichol-phosphate mannose synthase subunit 2-like [KO:K09658]
121975297  dolichol-phosphate mannose synthase subunit 3-like [KO:K09659]
121975302  dolichol-phosphate mannose synthase subunit 3-like [KO:K09659]
121975308  dolichol-phosphate mannose synthase subunit 3-like [KO:K09659]
121970214  dolichol-phosphate mannose synthase subunit 3-like [KO:K09659]
121970219  dolichol-phosphate mannose synthase subunit 3-like [KO:K09659]
122056607  UDP-glycosyltransferase TURAN-like isoform X1 [KO:K03842] [EC:2.4.1.142]
122052098  UDP-glycosyltransferase TURAN-like isoform X1 [KO:K03842] [EC:2.4.1.142]
122042231  alpha-1,3/1,6-mannosyltransferase ALG2-like [KO:K03843] [EC:2.4.1.132 2.4.1.257]
122046759  alpha-1,3/1,6-mannosyltransferase ALG2-like [KO:K03843] [EC:2.4.1.132 2.4.1.257]
122056577  GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase-like [KO:K03844] [EC:2.4.1.131]
122052061  GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase-like [KO:K03844] [EC:2.4.1.131]
122047205  dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase-like isoform X1 [KO:K03845] [EC:2.4.1.258]
121967403  dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase-like isoform X1 [KO:K03845] [EC:2.4.1.258]
122036790  dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase-like isoform X1 [KO:K03845] [EC:2.4.1.258]
122003059  dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase-like [KO:K03846] [EC:2.4.1.259 2.4.1.261]
122007318  dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase-like [KO:K03846] [EC:2.4.1.259 2.4.1.261]
121974897  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase-like [KO:K03847] [EC:2.4.1.260]
121969770  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase-like isoform X1 [KO:K03847] [EC:2.4.1.260]
122031939  probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase [KO:K03848] [EC:2.4.1.267]
121973202  probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase [KO:K03848] [EC:2.4.1.267]
122020970  probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [KO:K03849] [EC:2.4.1.265]
122029159  dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase-like isoform X1 [KO:K03850] [EC:2.4.1.256]
121970762  dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase-like isoform X1 [KO:K03850] [EC:2.4.1.256]
122027046  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A-like [KO:K07151] [EC:2.4.99.18]
122043101  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [KO:K07151] [EC:2.4.99.18]
122029466  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A-like [KO:K07151] [EC:2.4.99.18]
122031177  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A-like [KO:K07151] [EC:2.4.99.18]
122047604  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B-like [KO:K07151] [EC:2.4.99.18]
122034216  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A-like [KO:K07151] [EC:2.4.99.18]
122026994  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A-like [KO:K12666]
122042755  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B-like [KO:K12666]
122029403  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A-like [KO:K12666]
122047265  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B-like [KO:K12666]
122005947  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X1 [KO:K12667]
121979273  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like [KO:K12667]
121983921  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like [KO:K12667]
122001652  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like [KO:K12667]
121974733  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1-like [KO:K12668]
122042731  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1-like isoform X1 [KO:K12668]
122047246  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 [KO:K12668]
121969596  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 [KO:K12668]
122036311  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1-like [KO:K12668]
122053417  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1-like [KO:K12668]
122042242  dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [KO:K12670]
122046772  dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [KO:K12670]
121998557  probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3 [KO:K19478]
121967277  probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3 [KO:K19478]
121989618  probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3 [KO:K19478]
122052497  probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [KO:K19478]
121968269  oligosaccharyltransferase complex subunit ostc-like [KO:K26501]
122053778  oligosaccharyltransferase complex subunit ostc-like [KO:K26501]
121971593  transmembrane protein 258-like [KO:K26502]
121976063  transmembrane protein 258-like [KO:K26502]
122005099  lipid phosphate phosphatase gamma-like [KO:K07252] [EC:3.6.1.43]
122017954  lipid phosphate phosphatase gamma-like [KO:K07252] [EC:3.6.1.43]
122019963  lipid phosphate phosphatase gamma-like [KO:K07252] [EC:3.6.1.43]
122009661  lipid phosphate phosphatase gamma-like [KO:K07252] [EC:3.6.1.43]
122051418  lipid phosphate phosphatase gamma-like [KO:K07252] [EC:3.6.1.43]
121999868  lipid phosphate phosphatase gamma-like [KO:K07252] [EC:3.6.1.43]
122018848  mannosyl-oligosaccharide glucosidase GCS1-like isoform X1 [KO:K01228] [EC:3.2.1.106]
122020435  mannosyl-oligosaccharide glucosidase GCS1-like [KO:K01228] [EC:3.2.1.106]
122022508  mannosyl-oligosaccharide glucosidase GCS1-like isoform X1 [KO:K01228] [EC:3.2.1.106]
121975914  probable glucan 1,3-alpha-glucosidase [KO:K05546] [EC:3.2.1.207]
121971737  probable glucan 1,3-alpha-glucosidase [KO:K05546] [EC:3.2.1.207]
121980323  mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3-like [KO:K23741] [EC:3.2.1.209]
121984236  mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3-like [KO:K23741] [EC:3.2.1.209]
121976732  mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [KO:K01230] [EC:3.2.1.113]
121980603  mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [KO:K01230] [EC:3.2.1.113]
121970895  mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [KO:K01230] [EC:3.2.1.113]
121984513  mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [KO:K01230] [EC:3.2.1.113]
122009054  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like isoform X1 [KO:K00726] [EC:2.4.1.101]
122015199  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like isoform X1 [KO:K00726] [EC:2.4.1.101]
122017400  alpha-mannosidase 2-like [KO:K01231] [EC:3.2.1.114]
122008780  alpha-mannosidase 2-like [KO:K01231] [EC:3.2.1.114]
122041444  alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [KO:K00736] [EC:2.4.1.143]
122011760  alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like isoform X1 [KO:K00736] [EC:2.4.1.143]
122014723  alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like isoform X1 [KO:K00736] [EC:2.4.1.143]
122041305  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [KO:K00737] [EC:2.4.1.144]
122017225  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [KO:K00737] [EC:2.4.1.144]
122005353  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [KO:K00737] [EC:2.4.1.144]
122006876  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [KO:K00737] [EC:2.4.1.144]
122045797  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [KO:K00737] [EC:2.4.1.144]
121979777  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [KO:K00737] [EC:2.4.1.144]
122048809  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [KO:K00737] [EC:2.4.1.144]
122021110  uncharacterized protein LOC122021110 [KO:K00737] [EC:2.4.1.144]
122021257  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [KO:K00737] [EC:2.4.1.144]
122037934  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [KO:K00737] [EC:2.4.1.144]
122001068  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [KO:K00737] [EC:2.4.1.144]
122002634  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [KO:K00737] [EC:2.4.1.144]
122024772  uncharacterized protein LOC122024772 [KO:K00737] [EC:2.4.1.144]
122025047  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [KO:K00737] [EC:2.4.1.144]
Compound
C00096  GDP-mannose
C00110  Dolichyl phosphate
C00381  Dolichol
C00621  Dolichyl diphosphate
C01246  Dolichyl beta-D-glucosyl phosphate
C03021  Protein asparagine
C03862  Dolichyl phosphate D-mannose
C06081  Polyprenol
G00001  N-Acetyl-D-glucosaminyldiphosphodolichol
G00002  N,N'-Chitobiosyldiphosphodolichol
G00003   
G00004   
G00005   
G00006   
G00007   
G00008   
G00009   
G00010   
G00011   
G00012   
G00013   
G00014   
G00015   
G00016  Core fucose
G00017   
G00018  DS 3
G00019   
G00020   
G00021   
G00022   
G00171   
G10526   
G10595   
G10596   
G10597   
G10598   
G10599   
G10694   
Reference
PMID:9111134
  Authors
Schutzbach JS.
  Title
The role of the lipid matrix in the biosynthesis of dolichyl-linked oligosaccharides.
  Journal
Glycoconj J 14:175-82 (1997)
DOI:10.1023/A:1018533620002
Reference
  Authors
Oriol R, Martinez-Duncker I, Chantret I, Mollicone R, Codogno P.
  Title
Common origin and evolution of glycosyltransferases using Dol-P-monosaccharides as donor substrate.
  Journal
Mol Biol Evol 19:1451-63 (2002)
DOI:10.1093/oxfordjournals.molbev.a004208
Reference
  Authors
Thiel C, Schwarz M, Peng J, Grzmil M, Hasilik M, Braulke T, Kohlschutter A, von Figura K, Lehle L, Korner C.
  Title
A new type of congenital disorders of glycosylation (CDG-Ii) provides new insights into the early steps of dolichol-linked oligosaccharide biosynthesis.
  Journal
J Biol Chem 278:22498-505 (2003)
DOI:10.1074/jbc.M302850200
Reference
  Authors
Cipollo JF, Trimble RB, Chi JH, Yan Q, Dean N.
  Title
The yeast ALG11 gene specifies addition of the terminal alpha 1,2-Man to the Man5GlcNAc2-PP-dolichol N-glycosylation intermediate formed on the cytosolic side of the endoplasmic reticulum.
  Journal
J Biol Chem 276:21828-40 (2001)
DOI:10.1074/jbc.M010896200
Reference
  Authors
Frank CG, Aebi M.
  Title
ALG9 mannosyltransferase is involved in two different steps of lipid-linked oligosaccharide biosynthesis.
  Journal
Glycobiology 15:1156-63 (2005)
DOI:10.1093/glycob/cwj002
Reference
  Authors
O'Reilly MK, Zhang G, Imperiali B.
  Title
In vitro evidence for the dual function of Alg2 and Alg11: essential mannosyltransferases in N-linked glycoprotein biosynthesis.
  Journal
Biochemistry 45:9593-603 (2006)
DOI:10.1021/bi060878o
Related
pathway
zof00051  Fructose and mannose metabolism
zof00511  Other glycan degradation
zof00513  Various types of N-glycan biosynthesis
zof00520  Amino sugar and nucleotide sugar metabolism
zof00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
zof00900  Terpenoid backbone biosynthesis
KO pathway
ko00510   
LinkDB

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