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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:bsd03030]
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03410 Base excision repair [PATH:bsd03410]
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03420 Nucleotide excision repair [PATH:bsd03420]
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03430 Mismatch repair [PATH:bsd03430]
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03440 Homologous recombination [PATH:bsd03440]
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03450 Non-homologous end-joining [PATH:bsd03450]
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 BLASA_3099 DNA end-binding protein Ku
BLASA_1744 putative DNA end-binding protein Ku
BLASA_3098 LigD; DNA ligase D/DNA polymerase
BLASA_3097 DNA polymerase LigD, polymerase domain
BLASA_1171 DNA primase, small subunit
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K10979 ku; DNA end-binding protein Ku
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:bsd03000]
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03021 Transcription machinery [BR:bsd03021]
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03019 Messenger RNA biogenesis [BR:bsd03019]
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03041 Spliceosome
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03011 Ribosome [BR:bsd03011]
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03009 Ribosome biogenesis [BR:bsd03009]
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03016 Transfer RNA biogenesis [BR:bsd03016]
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03012 Translation factors [BR:bsd03012]
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03110 Chaperones and folding catalysts [BR:bsd03110]
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04131 Membrane trafficking [BR:bsd04131]
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04121 Ubiquitin system [BR:bsd04121]
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03051 Proteasome [BR:bsd03051]
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03032 DNA replication proteins [BR:bsd03032]
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03036 Chromosome and associated proteins [BR:bsd03036]
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03400 DNA repair and recombination proteins [BR:bsd03400]
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BLASA_0879 Methylated-DNA/protein-cysteinemethyltransferase
BLASA_0182 phr; Deoxyribodipyrimidine photo-lyase (fragment)
BLASA_2450 putative 3-methyladenine DNA glycosylase
BLASA_0597 mutY; A/G-specific DNA-adenine glycosylase
BLASA_0519 nth; Endonuclease III
BLASA_0639 Putative DNA helicase, superfamily II
BLASA_0933 NUDIX hydrolase
BLASA_0301 NUDIX hydrolase
BLASA_4087 nudF; ADP-ribose pyrophosphatase
BLASA_3294 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
BLASA_2939 mug; G/U mismatch-specific DNA glycosylase
BLASA_0674 Uracil-DNA glycosylase, family 4
BLASA_4250 Uracil-DNA glycosylase, family 4
BLASA_0789 putative uracil-DNA glycosylase
BLASA_0880 ada; putative regulatory protein ada [Includes: Methylated-DNA--protein-cysteine methyltransferase]
BLASA_0956 tag; 3-methyl-adenine DNA glycosylase I, constitutive
BLASA_3807 mutM2; Formamidopyrimidine-DNA glycosylase
BLASA_0189 mutM; DNA-(Apurinic or apyrimidinic site) lyase; Formamidopyrimidine-DNA glycosylase
BLASA_0685 DNA glycosylase
BLASA_3691 DNA glycosylase
BLASA_4860 Exodeoxyribonuclease III
BLASA_2145 nfo; endonuclease IV with intrinsic 3'-5' exonuclease activity
BLASA_5049 putative endonuclease 4
BLASA_2782 Endonuclease V
BLASA_3865 ligA2; DNA ligase
BLASA_2296 polA; DNA polymerase I
BLASA_3244 uvrA; UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A)(Excinuclease ATPase subunit)
BLASA_3254 uvrB; UvrABC system protein B
BLASA_3242 uvrC; Excinuclease, UvrABC system protein C
BLASA_0021 putative DNA helicase
BLASA_4225 pcrA; ATP-dependent DNA helicase pcrA
BLASA_4049 uvrD; DNA/RNA helicase, superfamily I
BLASA_4066 uvrD2; DNA/RNA helicase, superfamily I
BLASA_4307 rpoB; DNA-directed RNA polymerase subunit beta
BLASA_4306 rpoC; DNA-directed RNA polymerase subunit beta'
BLASA_4270 rpoA; DNA-directed RNA polymerase alpha chain
BLASA_2370 rpoZ; DNA-directed RNA polymerase subunit omega
BLASA_0779 mfd; Transcription-repair-coupling factor
BLASA_0873 xseA; Exodeoxyribonuclease 7 large subunit
BLASA_0872 Exodeoxyribonuclease VII small subunit
BLASA_2250 dnaE2; DNA polymerase III subunit alpha
BLASA_0003 dnaN; DNA polymerase III subunit beta
BLASA_1570 DNA polymerase III, delta subunit
BLASA_0569 dnaX2; DNA polymerase III, delta prime subunit
BLASA_3490 Putative exonuclease, RNase T and DNA polymerase III
BLASA_2115 polC; DNA-directed DNA polymerase
BLASA_0477 DNA polymerase III, subunits gamma and tau
BLASA_1316 ssb; Single stranded DNA-binding protein
BLASA_2474 Single-strand binding protein
BLASA_5037 ssb2; Single-stranded DNA-binding protein
BLASA_3506 Putative NaeI very short patch repair endonuclease
BLASA_1034 Exodeoxyribonuclease V beta chain (fragment)
BLASA_1035 Exodeoxyribonuclease V beta chain (fragment)
BLASA_1033 recC; Exodeoxyribonuclease V gamma chain
BLASA_1036 recD; Exodeoxyribonuclease V alpha chain
BLASA_2702 putative ATP-dependent exoDNAse (Exonuclease V), alpha subunit/helicase superfamily I member
BLASA_4864 TrwC9; Conjugative TrwC relaxase (fragment)
BLASA_0902 trwC7; Conjugative relaxase TrwC
BLASA_3942 trwC5; Conjugative TrwC relaxase
BLASA_4340 trwC3; conjugative relaxase TrwC
BLASA_3685 recA; Recombinase A (recA)
BLASA_2324 ruvA; Holliday junction ATP-dependent DNA helicase ruvA
BLASA_2325 ruvB; Holliday junction DNA helicase ruvB
BLASA_2323 ruvC; Crossover junction endodeoxyribonuclease ruvC (Holliday junction nuclease ruvC)
BLASA_2373 priA2; putative primosomal protein N'
BLASA_4145 putative ATP-dependent dsDNA exonuclease
BLASA_4146 sbcD; Exodeoxyribonuclease I subunit D
BLASA_0601 radA; DNA repair protein radA homolog
BLASA_0005 recF; DNA replication and repair protein recF
BLASA_1261 putative transcriptional regulator
BLASA_2165 putative transcriptional regulator
BLASA_0490 putative transcriptional regulator
BLASA_3814 recG; ATP-dependent DNA helicase recG
BLASA_1614 recO; DNA repair protein recO
BLASA_0479 recR; Recombination protein recR
BLASA_2482 recN; DNA repair protein recN
BLASA_3099 DNA end-binding protein Ku
BLASA_1744 putative DNA end-binding protein Ku
BLASA_3098 LigD; DNA ligase D/DNA polymerase
BLASA_3097 DNA polymerase LigD, polymerase domain
BLASA_1171 DNA primase, small subunit
BLASA_0012 gyrA; DNA gyrase subunit A
BLASA_0011 gyrB; DNA gyrase subunit B
BLASA_0566 topA; DNA topoisomerase 1
BLASA_3104 Topoisomerase IB
BLASA_0271 hup; Bacterial nucleoid DNA-binding HU protein
BLASA_0157 recQ; ATP-dependent DNA helicase RecQ
BLASA_4851 ATP-dependent DNA helicase, RecQ family
BLASA_2206 dinB; DNA polymerase IV
BLASA_5024 dinB2; DNA polymerase IV
BLASA_3661 lexA; LexA repressor
BLASA_2192 DNA polymerase III, alpha subunit
BLASA_3684 recX; Regulatory protein RecX
BLASA_3689 putative ATP-dependent helicase lhr
BLASA_3832 putative NUDIX hydrolase
BLASA_2492 putative NTP pyrophosphohydrolase
BLASA_3657 nrdJ; Vitamin B12-dependent ribonucleotide reductase
BLASA_3740 Phosphoesterase
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K10979 ku; DNA end-binding protein Ku
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:bsd03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Blastococcus saxobsidens