SSDB Best Search Result

Entry:sve:SVEN_5001 (294 a.a.)
Name:ATP-dependent DNA ligase clustered with Ku protein, LigD
KO:K01971 bifunctional non-homologous end joining protein LigD

Search Result : 77 hits (reference genome only)

                 Entry                                       KO      len   SW-score  identity  overlap  
------------------------------------------------------------------ -------------------------------------
sgr:SGR_2196 conserved hypothetical protein             K01971     296     1528     0.763      295     
sma:SAVERM_2946 putative DNA ligase                     K01971     293     1420     0.714      294     
sgu:SGLAU_22865 DNA polymerase LigD, polymerase domain- K01971     290     1407     0.722      291     
sco:SCO5308 conserved hypothetical protein              K01971     293     1350     0.690      294     
sct:SCAT_5459 conserved protein of unknown function     K01971     298     1013     0.540      291     
kfl:Kfla_5357 DNA polymerase LigD, polymerase domain pr K01971     308      929     0.503      292     
stp:Strop_3967 DNA primase, small subunit               K01971     302      927     0.529      297     
amd:AMED_3255 ATP-dependent DNA ligase                  K01971     670      916     0.514      278     
sen:SACE_3549 DNA ligase (ATP)                          K01971     302      916     0.510      288     
ase:ACPL_519 DNA ligase (ATP)                           K01971     301      884     0.490      300     
nca:Noca_1237 ATP dependent DNA ligase                  K01971     304      861     0.509      291     
rha:RHA1_ro05048 DNA ligase (ATP)                       K01971     766      753     0.442      285     
gpo:GPOL_c05170 putative ATP-dependent DNA ligase       K01971     812      741     0.432      308     
msm:MSMEG_5570 DNA ligase                               K01971     755      737     0.442      278     
ccyc:SCMU_35490 ATP-dependent DNA ligase                K01971     899      715     0.427      293     
nfa:NFA_6770 putative ATP-dependent DNA ligase          K01971     808      711     0.438      290     
rer:RER_45220 ATP-dependent DNA ligase LigD             K01971     758      704     0.410      288     
mva:Mvan_4915 ATP-dependent DNA ligase LigD ligase modu K01971     763      686     0.439      287     
mmi:MMAR_4573 ATP dependent DNA ligase                  K01971     770      668     0.397      295     
mul:MUL_4434 ATP dependent DNA ligase                   K01971     770      664     0.393      295     
mtu:Rv0938 multifunctional non-homologous end joining D K01971     759      651     0.413      286     
mtc:MT0965 conserved hypothetical protein/DNA ligase    K01971     759      651     0.413      286     
mab:MAB_1033 Putative ATP-dependent DNA ligase          K01971     750      649     0.424      276     
mta:Moth_2067 conserved hypothetical protein            K01971     312      516     0.353      289     
sur:STAUR_6997 ATP dependent DNA ligase                 K01971     836      514     0.357      283     
brh:RBRH_02846 ATP-dependent DNA ligase (EC 6.5.1.1)    K01971     309      513     0.372      277     
xcc:XCC0105 ATP-dependent DNA ligase                    K01971    1001      508     0.336      271     
eba:ebA6655 ATP-dependent DNA ligase                    K01971     742      500     0.327      278     
sro:Sros_6714 DNA primase small subunit                            334      497     0.328      287     
sjp:SJA_C1-12900 ATP-dependent DNA ligase               K01971     829      491     0.327      297     
xau:Xaut_4365 DNA ligase D                              K01971     886      489     0.370      246     
nar:Saro_1695 ATP-dependent DNA ligase LigD phosphoeste K01971     843      487     0.320      272     
chy:CHY_0025 conserved hypothetical protein             K01971     293      485     0.337      273     
reu:Reut_B4424 ATP-dependent DNA ligase LigD polymerase K01971     930      477     0.381      239     
swi:Swit_3982 DNA ligase D                              K01971     837      474     0.338      260     
sme:SM_b20685 putative DNA ligase                                  818      473     0.342      278     
phe:Phep_1702 DNA ligase D                              K01971     877      471     0.347      259     
bps:BPSS2211 putative ATP-dependent DNA ligase          K01971    1159      471     0.366      254     
sml:Smlt2530 putative DNA ligase family protein         K01971     849      470     0.336      268     
xac:XAC2414 ATP-dependent DNA ligase                    K01971     872      467     0.336      265     
bxe:Bxe_A2328 ATP-dependent DNA ligase LigD phosphoeste K01971    1001      466     0.369      255     
ssy:SLG_04290 putative DNA ligase                       K01971     835      465     0.308      299     
psb:Psyr_3245 ATP-dependent DNA ligase LigD phosphoeste K01971     866      464     0.364      250     
mlo:mll2077 probable ATP-dependent DNA ligase                      833      463     0.328      262     
pde:Pden_4186 conserved hypothetical protein            K01971     330      462     0.358      232     
atu:Atu5055 ATP-dependent DNA ligase                    K01971     884      461     0.337      246     
reh:H16_B2352 ATP-dependent DNA ligase                  K01971     910      460     0.339      254     
sno:Snov_0819 DNA ligase D                              K01971     842      456     0.351      271     
scl:sce3523 unnamed protein product; High confidence in K01971     762      456     0.331      272     
azc:AZC_1006 ATP-dependent DNA ligase                   K01971     900      453     0.316      269     
ret:RHE_PE00252 putative ATP-dependent DNA ligase prote K01971     882      453     0.326      261     
rsp:RSP_2679 ATP-dependent DNA ligase LigD polymerase m K01971     868      452     0.355      251     
rpa:TX73_018915 DNA ligase D                            K01971     914      451     0.336      265     
rle:pRL120229 putative DNA ligase family protein        K01971     881      444     0.320      269     
bpf:BpOF4_18445 ATP-dependent DNA ligase                K01971     578      437     0.304      276     
pjd:Pjdr2_4985 DNA polymerase LigD, polymerase domain p K01971     304      437     0.321      293     
pst:PSPTO_3464 DNA ligase, ATP-dependent, putative      K01971     851      436     0.353      249     
bsu:BSU13400 ATP-dependent DNA ligase YkoU              K01971     611      430     0.301      279     
bja:bll6773 ORF_ID:bll6773; probable DNA ligase         K01971     892      428     0.337      243     
cpy:Cphy_1729 DNA ligase D                              K01971     813      420     0.322      270     
ppu:PP_3260 DNA ligase D                                K01971     833      412     0.351      251     
dsy:DSY0616 hypothetical protein                        K01971     818      408     0.327      272     
bha:BH2209 BH2209; unknown conserved protein            K01971     611      375     0.285      277     
pae:PA2138 multifunctional non-homologous end joining p K01971     840      371     0.328      271     
oih:OB3034 hypothetical conserved protein               K01971     595      363     0.297      273     
ksk:KSE_05320 hypothetical protein                      K01971     173      223     0.374      131     
tru:105416620 neurogenic locus notch homolog protein 1             781      135     0.380      79      
tcr:508197.30 hypothetical protein                                 583      129     0.297      138     
mja:MJ_ECS07 hypothetical protein                                  441      120     0.219      219     
mmu:243958 sialic acid-binding Ig-like lectin 10 isofor K06749     688      119     0.239      218     
vg:28479235 Brejeira virus; hypothetical protein 1                2337      117     0.231      156     
dne:112987784 phosphatidylinositol 4-phosphate 3-kinase K00923    1482      115     0.329      70      
spu:584514 sulfotransferase 1C2-like                    K01025     330      114     0.269      104     
apla:101790027 phosphatidylinositol 4-phosphate 3-kinas K00923    1477      111     0.324      68      
clv:102083874 phosphatidylinositol 4-phosphate 3-kinase            679      107     0.300      70      
ath:AT4G23970 uncharacterized protein                              100       97     0.272      92      
mtr:11440581 F-box/LRR-repeat protein At4g14103                    250       95     0.292      72      

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